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BioLiP
>protein
TNTDDIRSLRVITAIKTPYLPDGRFDLQAYDDLVNTQIENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGRIKVI
GNTGSNSTREAIHATEQGFAMGMHGALHINPYYGKTSIEGMNAHFQTVLHMGPTIIYNVPGRTCQDIPPQVIFKLSQNPN
MAGVKECVGNNRVEEYTEKGIVVWSGNDDQCHDSRWDHGATGVISVTSNLVPGLMRKLMFEGRNSALNAKLLPLMDWLFQ
EPNPIGVNTALAQLGVARPVFRLPYVPLPLSKRIEFVKLVKEIGREHFVGDRDVQVLDDDDFILIGRY

The query sequence (length=308) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6vvh:BBB 313 308 1.0000 0.9840 1.0000 0.0 4dpq:A, 4dpq:B, 7mds:A, 7mds:B, 6vvh:AAA, 6vvh:CCC, 6vvh:DDD
2 4hnn:F 320 308 0.7955 0.7656 0.7955 0.0 4hnn:A, 4hnn:B, 4hnn:C, 4hnn:D, 4hnn:E, 4hnn:G, 4hnn:H
3 5ui3:C 306 307 0.6136 0.6176 0.6156 2.70e-141 5ui3:D, 5ui3:A, 5ui3:B
4 4dxv:A 291 288 0.3247 0.3436 0.3472 1.94e-47 3pue:B, 3pul:B, 3rk8:A, 3rk8:B, 3tak:A, 3tak:B, 3tce:A, 3tce:B, 3tdf:A, 3tdf:B, 3u8g:A, 3u8g:B
5 5ktl:A 295 267 0.3117 0.3254 0.3596 2.37e-47 5ktl:B
6 5t25:A 293 286 0.3344 0.3515 0.3601 1.69e-46 2ats:A, 2ats:B, 3i7s:A, 3i7s:B, 7jz8:A, 7jz8:B, 7jza:A, 7jza:B, 7jzb:A, 7jzb:B, 7jzg:A, 7jzg:B, 5t25:B, 1yxd:A, 1yxd:B
7 1o5k:A 295 289 0.3377 0.3525 0.3599 8.07e-46
8 3puo:A 292 265 0.3247 0.3425 0.3774 1.87e-45 3puo:B, 3s8h:A, 3s8h:B
9 4pfm:A 295 271 0.3247 0.3390 0.3690 1.35e-42 4pfm:B
10 4fha:A 307 294 0.3019 0.3029 0.3163 2.89e-42 4fha:B
11 3di1:B 291 267 0.2695 0.2852 0.3109 6.05e-38 3di1:A
12 7kkd:B 306 267 0.2987 0.3007 0.3446 7.63e-37 5f1u:A, 5f1u:B, 5f1u:C, 5f1u:D, 5f1v:A, 5f1v:C, 5f1v:B, 5f1v:D, 7kg2:A, 7kg2:C, 7kg2:B, 7kg2:D, 7kg2:E, 7kg2:F, 7kg5:A, 7kg5:B, 7kg5:C, 7kg5:E, 7kg5:F, 7kg9:A, 7kg9:E, 7kg9:B, 7kg9:C, 7kg9:D, 7kg9:F, 7kh4:A, 7kh4:F, 7kh4:B, 7kh4:C, 7kh4:D, 7kh4:E, 7kk1:A, 7kk1:B, 7kk1:C, 7kk1:D, 7kk1:E, 7kk1:F, 7kkd:A, 7kkd:F, 7kkd:E, 7kkd:C, 7kkd:D, 7kkg:A, 7kkg:D, 7kkg:B, 7kkg:E, 7kkg:C, 7kkg:F, 7kkt:A, 7kkt:F, 7kkt:B, 7kkt:E, 7kkt:C, 7kkt:D, 7kls:A, 7kls:F, 7kls:B, 7kls:C, 7kls:D, 7kls:E, 7klt:A, 7klt:C, 7klt:E, 7klt:F, 7kly:A, 7kly:D, 7kly:B, 7kly:C, 7kly:E, 7kly:F, 7km0:B, 7km0:C, 7km0:A, 7km0:D, 7km0:E, 7km0:F, 7km1:A, 7km1:B, 7km1:C, 7km1:D, 7km1:E, 7km1:F, 7kn9:A, 7kn9:B, 7kn9:C, 7kn9:D, 7kn9:E, 7kn9:F, 7knz:B, 7knz:C, 7knz:A, 7knz:D, 7knz:E, 7knz:F, 7ko3:A, 7ko3:B, 7ko3:C, 7ko3:D, 7ko3:E, 7ko3:F, 7kpc:A, 7kpc:B, 7kpc:C, 7kpc:D, 7kpc:E, 7kpc:F, 7kpe:B, 7kpe:C, 7kpe:A, 7kpe:D, 7kpe:E, 7kpe:F, 7kr7:A, 7kr7:E, 7kr7:B, 7kr7:C, 7kr7:D, 7kr7:F, 7kr8:B, 7kr8:D, 7kto:A, 7kto:B, 7kto:C, 7kto:D, 7kto:E, 7kto:F, 7ku6:D, 7kuz:A, 7kuz:F, 7kuz:B, 7kuz:C, 7kuz:D, 7kuz:E, 7kwf:B, 7kwf:F, 7kwf:A, 7kwf:C, 7kwf:D, 7kwf:E, 7kwn:B, 7kwp:A, 7kwp:B, 7kwp:C, 7kwp:D, 7kwp:E, 7kwp:F, 7kx1:A, 7kxg:A, 7kxg:C, 7kxg:B, 7kxg:D, 7kxg:E, 7kxg:F, 7kxh:A, 7kxh:D, 7kxh:B, 7kxh:C, 7kxh:E, 7kxh:F, 7kz2:A, 7kz2:D, 7kz2:B, 7kz2:C, 7kz2:E, 7kz2:F, 7lcf:A, 7lcf:B, 7lcf:F, 7lcf:C, 7lcf:D, 7lcf:I, 7lcf:E, 7lcf:G, 7lcf:H, 7lcf:J, 7lcf:K, 7lcf:L, 7m06:B, 7m06:C, 7m06:D, 4m19:A, 4m19:B, 4m19:C, 4m19:D, 4mlr:A, 4mlr:D, 4mlr:C, 4mlr:E, 4mlr:F, 4mlr:G, 4mlr:H, 6u01:B
13 5ud6:C 299 274 0.2955 0.3043 0.3321 2.25e-35 5ud6:A, 5ud6:B, 5ud6:D
14 5j5d:A 297 213 0.2305 0.2391 0.3333 7.01e-33 3l21:B, 1xxx:A, 1xxx:B, 1xxx:C, 1xxx:D, 1xxx:E, 1xxx:F, 1xxx:G, 1xxx:H
15 7lvl:A 296 282 0.3019 0.3142 0.3298 1.11e-32 7lvl:B, 7lvl:C, 7lvl:E, 7lvl:D, 7lvl:F, 7mjf:A, 7mjf:B, 7mjf:C, 7mjf:D, 7mjf:E, 7mjf:F
16 4i7w:A 294 255 0.2727 0.2857 0.3294 4.88e-32 4i7w:B
17 3nev:A 298 224 0.1948 0.2013 0.2679 5.51e-17 3nev:B, 3nev:C, 3nev:D, 4oe7:A, 4oe7:B, 4oe7:C, 4oe7:D, 4onv:A, 4onv:B, 4onv:C, 4onv:D, 4ptn:A, 4ptn:B, 4ptn:C, 4ptn:D, 4u4m:A, 4u4m:B, 4u4m:C, 4u4m:D
18 8u8w:A 297 290 0.2305 0.2391 0.2448 1.35e-15
19 5c55:A 307 273 0.2013 0.2020 0.2271 2.96e-15 5c55:B
20 2wpb:A 302 290 0.2240 0.2285 0.2379 2.91e-14 4bwl:A, 4bwl:B, 4bwl:C, 4bwl:D, 1fdy:A, 1fdy:B, 1fdy:C, 1fdy:D, 1fdz:A, 1fdz:B, 1fdz:C, 1fdz:D, 1hl2:A, 1hl2:B, 1hl2:C, 1hl2:D, 3lbc:D, 3lcw:A, 3lcw:B, 3lcw:C, 3lcw:D, 4uui:A, 4uui:B, 4uui:C, 4uui:D, 2wkj:C, 2wkj:D, 2wpb:B, 2wpb:C, 2wpb:D, 2xfw:A, 2xfw:B, 2xfw:C, 2xfw:D
21 3na8:A 291 264 0.2013 0.2131 0.2348 2.32e-13 3na8:B, 3na8:C, 3na8:D
22 1f74:A 293 223 0.1688 0.1775 0.2332 6.81e-11 1f73:A, 1f73:B, 1f73:C, 1f73:D, 1f74:C, 1f7b:A, 1f7b:C
23 4img:A 293 217 0.1656 0.1741 0.2350 9.99e-11 4imf:A, 4imf:B, 4img:B
24 4woq:C 290 184 0.1526 0.1621 0.2554 1.00e-09 4woq:D, 4woq:E, 4woq:F, 4woq:H, 4woz:B, 4woz:F
25 2nuy:A 288 224 0.1656 0.1771 0.2277 1.48e-09 2nuy:B
26 6rb7:A 305 215 0.1494 0.1508 0.2140 4.28e-09 6rb7:B, 6rb7:E, 6rb7:F, 6rd1:A, 6rd1:B
27 3qfe:A 305 202 0.1526 0.1541 0.2327 3.56e-08
28 6g3z:A 293 233 0.1883 0.1980 0.2489 3.76e-08 6g3z:B, 6gt8:A, 6gt8:B, 6gv2:A, 6gv2:B, 6h2s:A, 6h2s:B, 6h2s:C, 6h2s:D, 6h7s:A, 6h7s:B, 1w3i:A, 1w3i:B, 1w3i:C, 1w3i:D, 1w3n:A, 1w3n:B, 1w3n:C, 1w3n:D, 1w3t:A, 1w3t:B, 1w3t:C, 1w3t:D
29 8do5:B 324 163 0.1299 0.1235 0.2454 1.56e-06 8do5:A
30 2r94:A 286 199 0.1461 0.1573 0.2261 2.62e-06 2r94:D, 2r94:B, 2r94:C
31 5kzd:A 284 213 0.1429 0.1549 0.2066 4.79e-05 5kzd:B, 5kzd:C, 5kzd:D
32 3ogd:A 288 37 0.0617 0.0660 0.5135 2.1 3cvs:A, 3cvs:B, 3cvs:C, 3cvs:D, 3cvt:A, 3cvt:B, 3cvt:C, 3cvt:D, 3cw7:A, 3cw7:B, 3cw7:C, 3cw7:D, 3cwa:A, 3cwa:B, 3cwa:C, 3cwa:D, 3cws:A, 3cws:B, 3cws:C, 3cws:D, 3cwt:A, 3cwt:B, 3cwt:C, 3cwt:D, 3cwu:A, 3cwu:B, 3cwu:C, 3cwu:D, 3d4v:A, 3d4v:B, 3d4v:C, 3d4v:D, 1diz:B, 1diz:A, 3oh6:A, 3oh9:A, 1pvs:A, 1pvs:B
33 4xru:B 394 36 0.0519 0.0406 0.4444 2.5 4xru:E
34 5hdt:A 1085 48 0.0552 0.0157 0.3542 3.5 5hdt:B
35 8hi5:A 647 73 0.0682 0.0325 0.2877 4.2
36 7ojk:L 1843 176 0.1429 0.0239 0.2500 8.4
37 1yux:B 202 30 0.0390 0.0594 0.4000 9.2 1yux:A, 1yuz:A, 1yuz:B, 1yv1:A, 1yv1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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