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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TNSDVTPVQAANQYGYAGLSAAYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTN
KEYIMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAAN
SRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTRNFSLEGAKMSLPGTDGLKTGSSD
TANYNHTITTKRGKFRINQVIMGAGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVENDLYDVLP
SDFSKKDYKLVVEDGKVHADYPREFINKDYGPPTVEVHQ

The query sequence (length=359) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7kcv:A 362 359 0.9916 0.9834 0.9916 0.0 6c39:A, 6dz8:A, 6dz8:B, 3hum:A, 3hum:B, 3hun:A, 3hun:B, 7kcw:A, 7kcx:A, 7kcy:A, 5tw4:A, 5tw4:B, 5tw8:A, 5tw8:B, 5tx9:A, 5tx9:B, 5txi:A, 5txi:B, 5ty2:A, 5ty2:B, 5ty7:A, 5ty7:B
2 5tr7:A 251 231 0.1978 0.2829 0.3074 3.06e-28
3 5zqa:A 248 243 0.2117 0.3065 0.3128 4.69e-23 5zqb:A, 5zqb:B, 5zqb:C, 5zqb:D, 5zqc:A, 5zqc:B, 5zqc:C, 5zqc:D, 5zqd:A, 5zqd:B, 5zqd:C, 5zqd:D, 5zqd:E, 5zqd:F, 5zqd:G, 5zqd:H, 5zqe:A, 5zqe:B, 5zqe:C, 5zqe:D, 5zqe:E, 5zqe:F, 5zqe:G, 5zqe:H
4 6ntz:A 367 320 0.2284 0.2234 0.2562 5.06e-23 3beb:A, 3bec:A, 5j8x:A, 3mzd:A, 3mze:A, 3mzf:A, 1z6f:A
5 3itb:D 351 234 0.2006 0.2051 0.3077 5.27e-23 3it9:A, 3it9:B, 3ita:A, 3ita:D, 3itb:C
6 8isq:A 261 85 0.0752 0.1034 0.3176 0.097 8isp:A, 8isr:A, 8isr:B
7 5izd:A 494 83 0.0641 0.0466 0.2771 0.17 5izd:B, 5izd:C, 5izd:D, 5izd:G, 5izd:H
8 3hlf:A 425 58 0.0501 0.0424 0.3103 0.79 3hld:A, 3hle:A, 3hlg:A
9 5l9w:b 649 111 0.0836 0.0462 0.2703 0.88
10 8fgw:C 1342 91 0.0585 0.0156 0.2308 1.2 8fh3:C
11 6gaw:Ap 190 94 0.0641 0.1211 0.2447 2.4 5aj3:p, 5aj4:Ap, 6gaz:Ap, 7nqh:Ap, 7nql:Ap, 7nsi:Ap, 7nsj:Ap, 8oin:AO, 8oip:AO, 6ydp:Ap, 6ydw:Ap
12 5na1:A 398 99 0.0752 0.0678 0.2727 5.2 5na4:A
13 1ci9:A 377 40 0.0418 0.0398 0.3750 5.8 1ci9:B
14 6klb:A 1118 67 0.0613 0.0197 0.3284 5.8 6klb:D
15 4pxl:A 486 110 0.0696 0.0514 0.2273 6.2 4pxl:B
16 8fw5:D 301 59 0.0501 0.0598 0.3051 6.3
17 4pz2:B 494 114 0.0641 0.0466 0.2018 8.3 4pz2:A, 4pz2:C, 4pz2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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