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BioLiP
>protein
TNNKYYTEENKKKVWKKHMIVLKFLEQPGISEAYLNYLQEEIHNDEWIGFENEFFEELTGKPVINV

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8anv:B 67 66 1.0000 0.9851 1.0000 2.46e-43 8anv:A
2 5b49:B 247 35 0.1818 0.0486 0.3429 0.53 5b49:A, 5b4a:A, 5b4a:B, 5b4b:A, 5b4b:B, 5b4c:A, 5b4c:B
3 6wmc:A 362 20 0.1515 0.0276 0.5000 1.5 6bux:A, 8h0i:A, 8h0i:B, 2mzz:A, 7uxd:A, 6wma:A, 6wmb:A
4 7uu5:A 379 20 0.1515 0.0264 0.5000 1.7 8e40:A, 8edj:A, 5k81:A, 5k81:B, 5k81:C, 5k81:D, 5k81:E, 5k81:F, 5k82:A, 5k82:B, 5k82:C, 5k82:D, 5k83:C, 5k83:E, 5k83:A, 5k83:D, 5k83:F, 5k83:B, 6p3x:A, 6p3x:B, 6p3y:A, 6p3y:B, 6p3z:A, 6p3z:B, 6p40:A, 6p40:B, 7uu3:A, 7uu3:B, 7uu4:A, 7uu5:B
5 6bwy:B 346 20 0.1515 0.0289 0.5000 2.1 6bwy:A, 6bwy:G, 6bwy:E, 1qzg:A, 1qzg:B, 1qzh:A, 1qzh:B, 1qzh:F, 1qzh:C, 1qzh:D, 1qzh:E
6 3l8a:B 385 39 0.2121 0.0364 0.3590 2.9 3l8a:A
7 8cx1:A 381 20 0.1515 0.0262 0.5000 3.0 8cx0:A, 8cx1:F, 8cx2:A, 8cx2:F, 3e1u:A, 3iqs:A, 3ir2:A, 3ir2:B, 2jyw:A, 6k3j:A, 6k3k:A, 2kbo:A, 2kem:A, 4rov:A, 4rov:B, 4row:A, 3v4j:A, 3v4j:B, 3v4k:A, 3v4k:B
8 6eej:A 264 43 0.1970 0.0492 0.3023 3.2 6eej:B, 6eej:C, 6eej:D, 4zbt:A, 4zbt:B, 4zbt:C, 4zbt:D
9 5hdt:A 1085 42 0.1515 0.0092 0.2381 4.3 5hdt:B
10 6hq7:A 377 47 0.2273 0.0398 0.3191 4.5 6hq3:B, 6hq3:C, 6hq3:A, 6hq3:D, 6hq4:A, 6hq4:B, 6hq5:A, 6hq5:B, 6hq7:B
11 8qjz:A 239 36 0.1515 0.0418 0.2778 5.2 8qk9:A, 8s7f:A
12 7loz:B 390 40 0.1818 0.0308 0.3000 7.7 7ll3:A, 7ll3:B, 7lnn:A, 7lnn:B, 7lo2:A, 7lo2:B, 7lo2:C, 7lo2:D, 7loo:A, 7loo:Q, 7loo:B, 7loo:R, 7low:A, 7low:B, 7loz:A, 1mxa:A, 1mxb:A, 1mxc:A, 1p7l:A, 1p7l:B, 1p7l:C, 1p7l:D, 7r2w:A, 1rg9:A, 1rg9:B, 1rg9:C, 1rg9:D, 1xra:A
13 3vu2:A 692 22 0.1364 0.0130 0.4091 7.8 7ml5:A, 3vu2:B
14 6pib:A 245 35 0.1515 0.0408 0.2857 8.9 9eng:A, 6ph9:A, 6pj3:A, 8qk2:A, 8qk5:A, 8qka:A, 7ss6:A, 7ss7:A, 6wii:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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