Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TNAIRNETGTSSKMFNLSKRLYDFKDNNLREIHEALYGLLRAGYDISNMRDVEELAKYVDVKKSHGKLLDVTRDDIELYH
RLFVARFGK

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ye9:B 89 89 1.0000 1.0000 1.0000 3.95e-61
2 4v1z:A 440 48 0.1685 0.0341 0.3125 0.49 4v20:A
3 5tuk:B 373 33 0.1685 0.0402 0.4545 0.60 5tuk:A, 5tuk:C, 5tuk:D
4 5wxy:A 227 36 0.1348 0.0529 0.3333 1.5 5wxz:A, 5xni:A, 5xnj:A, 5xnk:A
5 1mvo:A 121 49 0.2022 0.1488 0.3673 1.5
6 6pib:A 245 24 0.1236 0.0449 0.4583 4.1 9eng:A, 6ph9:A, 6pj3:A, 8qk2:A, 8qk5:A, 8qka:A, 7ss6:A, 7ss7:A, 6wii:A
7 8kdb:A 2117 17 0.1348 0.0057 0.7059 5.4 8kdc:A
8 3vth:A 753 30 0.1573 0.0186 0.4667 6.9 3vth:B, 3vti:A, 3vti:B
9 6c01:A 819 39 0.1685 0.0183 0.3846 6.9 6c01:B, 6c02:A, 6c02:B
10 8tzh:A 1485 56 0.2135 0.0128 0.3393 9.7 3d6t:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218