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BioLiP
>protein
TMQIKIKYLDETQTRISKIEQGDWIDLRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVI
DESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPAVELVEVEHLG

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4aoo:A 143 130 1.0000 0.9091 1.0000 1.25e-95 4ao5:A, 4ao5:B, 4ao5:C, 4ao5:D, 4ao5:E, 4ao5:F, 4aoo:B, 4aoo:C, 4aoo:D, 4aoz:A, 4aoz:B, 4aoz:C, 4apz:1, 4apz:Y, 4apz:2, 4apz:3, 4apz:4, 4apz:5, 4apz:7, 4apz:6, 4apz:8, 4apz:9, 4apz:a, 4apz:A, 4apz:C, 4apz:B, 4apz:D, 4apz:E, 4apz:F, 4apz:G, 4apz:I, 4apz:H, 4apz:J, 4apz:K, 4apz:L, 4apz:M, 4apz:N, 4apz:O, 4apz:P, 4apz:R, 4apz:Q, 4apz:S, 4apz:U, 4apz:T, 4apz:V, 4apz:W, 4apz:X, 4apz:Z, 4apz:b, 4apz:d, 4apz:c, 4apz:e, 4apz:g, 4apz:f, 4apz:h, 4apz:j, 4apz:i, 4apz:k, 4apz:m, 4apz:l, 4b0h:A, 4b0h:B, 4b0h:C, 2xce:A, 2xce:B, 2xce:C, 2xce:D, 2xce:E, 2xce:F, 2xy3:A, 2xy3:B, 2xy3:C, 2xy3:D, 2xy3:E, 2xy3:F
2 7n6s:C 147 119 0.3154 0.2789 0.3445 3.49e-14 7n6s:A, 7n6s:B, 7n6s:F, 7n6s:D, 7n6s:E
3 4gcy:A 163 128 0.3231 0.2577 0.3281 2.90e-12 8cga:A, 5ect:A, 5edd:A, 3h6d:A, 3hza:A, 3i93:A, 3loj:A, 2py4:A, 1six:A, 1sjn:A, 1sjn:C, 1sjn:B, 1sm8:A, 1sm8:B, 1sm8:C, 1smc:A, 1smc:B, 1smc:C, 1snf:A, 1snf:C, 1snf:B
4 8hrv:B 145 104 0.2846 0.2552 0.3558 6.80e-12 8hrv:A, 8hrv:C
5 3f4f:A 138 104 0.2615 0.2464 0.3269 2.04e-09 3f4f:B, 3f4f:C, 3p48:A, 3p48:C, 3p48:B
6 6mjk:A 144 130 0.3231 0.2917 0.3231 2.85e-09
7 4oop:B 142 128 0.3231 0.2958 0.3281 4.46e-09 4oop:A, 4oop:C
8 6ljj:A 150 128 0.3308 0.2867 0.3359 1.27e-07 3ara:A, 3ara:C, 3ara:B, 3arn:A, 3arn:C, 3arn:B, 3ehw:A, 3ehw:B, 3ehw:C, 3ehw:X, 3ehw:Y, 3ehw:Z, 5h4j:A, 2hqu:A, 2hqu:B, 2hqu:C
9 1f7r:A 133 63 0.1846 0.1805 0.3810 4.51e-06 1f7k:A, 1f7k:B, 1f7n:A, 1f7n:B, 1f7p:A, 1f7p:C, 1f7p:B, 1f7q:A, 1f7q:C, 1f7q:B
10 2ol1:C 125 128 0.2769 0.2880 0.2812 4.51e-05 2oke:A, 2oke:C, 2oke:B, 2ol1:A, 2ol1:B
11 5f9k:B 130 105 0.2231 0.2231 0.2762 1.92e-04 5f9k:A, 5f9k:C
12 6hde:B 152 65 0.1615 0.1382 0.3231 5.28e-04 1eu5:A, 1euw:A, 6hde:A, 6hde:C, 2hrm:A, 1rn8:A, 1rnj:A, 1seh:A, 1syl:A
13 6mao:A 137 91 0.1923 0.1825 0.2747 0.001
14 2y8c:C 136 131 0.3077 0.2941 0.3053 0.004 2y8c:B
15 5cct:A 169 117 0.2615 0.2012 0.2906 0.007 5cco:A, 5nyz:A, 5nz2:A, 3zez:A, 3zf0:A, 3zf1:A, 3zf4:A, 3zf5:A, 3zf6:A
16 4wrk:A 158 63 0.1692 0.1392 0.3492 0.018 4gv8:A, 4gv8:C, 4gv8:B, 4gv8:D, 4gv8:F, 4gv8:E, 4wrk:B, 4wrk:C, 4wrk:D, 4wrk:E, 4wrk:F
17 3t64:A 153 124 0.2769 0.2353 0.2903 0.67 3t60:A, 3t60:B, 3t60:C, 3t64:B, 3t64:C, 3t6y:A, 3t6y:B, 3t6y:C, 3t70:A, 3t70:B, 3t70:C, 1vyq:A, 1vyq:B, 1vyq:C, 2y8c:A
18 3hq2:B 497 26 0.0769 0.0201 0.3846 1.9 3hq2:A
19 7m7f:A 1390 35 0.0846 0.0079 0.3143 1.9 2fr0:A, 2fr1:A, 7m7i:A
20 5ggi:B 551 60 0.1385 0.0327 0.3000 3.0 5ggi:A, 5ggj:A, 5ggj:B, 5ggk:A, 5ggk:B, 5ggl:A, 5ggl:B, 5ggn:A, 5ggn:B, 5ggo:A, 5ggo:B, 5ggp:A, 5ggp:B, 5xfc:A, 5xfc:B
21 7dt1:A 846 93 0.1615 0.0248 0.2258 8.3 7dt1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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