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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TMNLNFSLLDEPIPLRGGTILVLEDVCVFSKIVQYCYQYESELKFFDHKMKTIKESEIMLVTDILGFDVNSSTILKLIHA
DLESQFNEKPEVKSMIDKLVATITELIVFECLENELDLEYDEITILELIKSLGVKVETSDTIFEKCLEILQIFKYLTKKK
LLIFVNSGAFLTKDEVASLQEYISLTNLTVLFLEPRELYDFPQYILDEDYFLITKNM

The query sequence (length=217) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3v7f:B 220 220 1.0000 0.9864 0.9864 5.79e-151 3toc:A, 3toc:B, 3v7f:A
2 3qhq:A 222 219 0.7005 0.6847 0.6941 4.21e-106 3qhq:B
3 6qxf:B 219 218 0.5714 0.5662 0.5688 3.87e-85 6qxf:A, 6qxf:C, 6qxf:D, 6qxf:E, 6qxf:F, 6qxf:G, 6qxf:H
4 3s5u:E 213 213 0.5438 0.5540 0.5540 3.61e-73 3s5u:A, 3s5u:B, 3s5u:C, 3s5u:D, 3s5u:F, 3s5u:G, 3s5u:H
5 1ywq:A 199 70 0.0553 0.0603 0.1714 3.6
6 4cuk:A 330 68 0.1060 0.0697 0.3382 5.8 4cuk:D
7 8bob:C 412 41 0.0783 0.0413 0.4146 8.6 8bob:D
8 4r6g:A 464 49 0.0737 0.0345 0.3265 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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