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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TMDTAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETV
LKQIREFLEEIVDT

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3kik:A 94 93 0.9894 0.9894 1.0000 2.42e-63 4c31:B, 4c31:E, 3kik:B, 3kik:D, 3kik:C, 3kjl:A, 3kjl:B, 3kjl:C, 3kjl:D, 4mbe:F, 4mbe:C
2 2a81:A 235 37 0.1277 0.0511 0.3243 1.4
3 5e3x:A 489 32 0.1277 0.0245 0.3750 4.0
4 7mq8:NH 1066 46 0.1596 0.0141 0.3261 4.5 7mqa:NH
5 8v83:b 423 33 0.1277 0.0284 0.3636 4.9 6elz:b, 6em1:b, 6em5:b, 7ohp:b, 7ohr:b, 7ohs:b, 7ohu:b, 7ohv:b, 8v84:b
6 7ohy:b 375 31 0.1170 0.0293 0.3548 5.5
7 6ylg:b 613 33 0.1277 0.0196 0.3636 6.8 7nac:b, 7of1:b, 7r7a:b, 6ylh:b
8 8hfr:rA 647 33 0.1277 0.0185 0.3636 7.2 7bt6:b, 7btb:b, 6c0f:W, 6ft6:b, 3jct:b, 5jcs:o, 6m62:b, 6n8j:b, 6n8k:b, 7nad:b, 7oh3:b, 7ohq:b, 7oht:b, 7r72:b, 7u0h:b, 7ug6:b, 7uoo:b, 7uqb:b, 7uqz:b, 7v08:b, 4v7f:o, 8v87:b, 6ylx:b, 6yly:b, 7z34:b
9 5j6f:A 352 32 0.1064 0.0284 0.3125 7.4 5j6f:B
10 4b7f:A 515 42 0.1170 0.0214 0.2619 7.7 4b7f:B, 4b7f:C, 4b7f:D, 4b7g:A, 4b7g:B, 4b7g:C, 4b7g:D, 4b7h:A, 4b7h:B, 4b7h:C, 4b7h:D
11 6j72:A 561 49 0.1170 0.0196 0.2245 7.9
12 7ohw:b 259 27 0.1170 0.0425 0.4074 8.9
13 7mq8:LO 848 50 0.1489 0.0165 0.2800 9.7 7mq9:LO
14 7mqa:LO 819 50 0.1489 0.0171 0.2800 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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