Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TMDHYLDIRLRPDPEFPPAQLMCVLFGKLHQALVAQGGDRIGVSFPDLDESRSRLGERLRIHASADDLRALLARPWLEGL
RDHLQFGEPAVVPHPTPYRQVSRVQAKSNPERLRRRLMRRHDEEEARKRLDLPFVTLRSQSTGQHFRLFIRHGPLQVTAE
EGGFTCYGLSKGGFVPWF

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4al5:A 189 188 1.0000 0.9418 0.9468 4.62e-125 6b44:L, 6b45:L, 6b46:L, 6b47:L, 6b48:L, 7ecv:L, 7elm:I, 7elm:S, 7eln:I, 7eln:S, 7eqg:L, 7jzw:C, 7jzx:C, 7jzy:C, 7jzz:C, 6ne0:L, 7t3j:C, 7t3k:C, 7t3k:c, 7t3l:C, 7t3l:c, 7taw:C, 7taw:c, 7tax:C, 5uz9:L, 6vqv:K, 6vqx:J, 6w1x:L, 7we6:I, 7we6:S, 6whi:L, 2xlj:A, 2xlk:A, 2xlk:B, 7yhs:L
2 2xli:A 167 178 0.9270 0.9880 0.9270 1.58e-113 4al6:A, 4al7:A
3 5o6u:B 182 185 0.3764 0.3681 0.3622 1.30e-31
4 5o7h:B 129 167 0.2640 0.3643 0.2814 4.37e-10
5 7wkp:A 167 154 0.2247 0.2395 0.2597 1.90e-08 8k0k:I, 8k22:H, 8k23:H, 8k23:h, 8k24:h, 8k24:H, 8k27:I, 8k28:I, 8k29:I, 7wwu:I
6 2eo5:A 412 28 0.0562 0.0243 0.3571 3.4
7 2e7u:A 424 69 0.1180 0.0495 0.3043 3.7
8 7vno:A 452 32 0.0618 0.0243 0.3438 4.7 7vno:B, 7vnt:A, 7vnt:B, 7vo1:A, 7vo1:B
9 5n5e:e 98 47 0.0787 0.1429 0.2979 5.3 5n5e:K, 5n5e:A, 5n5e:Z, 5n5e:B, 5n5e:Y, 5n5e:C, 5n5e:H, 5n5e:D, 5n5e:J, 5n5e:E, 5n5e:W, 5n5e:F, 5n5e:N, 5n5e:G, 5n5e:I, 5n5e:L, 5n5e:V, 5n5e:M, 5n5e:O, 5n5e:P, 5n5e:R, 5n5e:Q, 5n5e:d, 5n5e:T, 5n5e:U, 5n5e:X, 5n5e:b, 5n5e:a, 5n5e:c
10 8fth:A 1263 64 0.1067 0.0150 0.2969 6.7
11 2v7y:A 504 38 0.0787 0.0278 0.3684 7.4
12 5mcp:E 387 54 0.1011 0.0465 0.3333 7.5 5mcp:G
13 1vpe:A 398 69 0.1180 0.0528 0.3043 8.7
14 6x80:A 574 20 0.0674 0.0209 0.6000 10.0 6x80:B, 6x80:C, 6x80:D, 6x80:E, 6x80:F, 6x80:G, 6x80:H, 6x80:I, 6x80:J, 6x80:K, 6x80:L, 6x80:M, 6x80:N, 6x80:O, 6x80:P, 6x80:Q, 6x80:R, 6x80:S, 6x80:T, 6x80:U, 6x80:V

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218