Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TMDHLKHLQQLQNIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPKDKQIKE
EDLVAIFAASPIDNIEAYVEEIKNASIKRKLFGLANTIREQALESKSSDILGAVEREVYALLNGSTIEGFRNIKEVLESA
MDLITENQRVTGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSD
LTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMQIAEISRE
LKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKGGIEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEEERRIHKQNG
SIEEAEIIVAKNRNGATGTVYTRFNAPFTRYEDM

The query sequence (length=434) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zc0:B 434 434 1.0000 1.0000 1.0000 0.0 3gxv:A
2 8a3v:A 450 449 0.3456 0.3333 0.3341 6.69e-77 8a3v:B, 6t66:A, 6t66:B, 6t66:C, 6t66:D, 6t66:E, 6t66:F
3 6bbm:D 455 452 0.3502 0.3341 0.3363 8.88e-77 6bbm:F, 6bbm:B, 6bbm:C, 6bbm:E, 6qel:A, 6qel:B, 6qel:C, 6qel:D, 6qel:E, 6qel:F, 6qem:A, 6qem:B, 6qem:C, 6qem:D, 6qem:E, 6qem:F, 7t20:B, 7t20:C, 7t20:E, 7t20:F, 7t20:D, 7t21:A, 7t21:B, 7t21:C, 7t21:D, 7t21:E, 7t21:F, 7t22:A, 7t22:B, 7t22:C, 7t22:D, 7t22:E, 7t22:F, 7t23:A, 7t23:B, 7t23:C, 7t23:D, 7t23:E, 7t23:F
4 4esv:C 434 446 0.3502 0.3502 0.3408 3.04e-73 4esv:A, 4esv:B, 4esv:D, 4esv:E, 4esv:F, 4esv:G, 4esv:H, 4esv:I, 4esv:J, 4esv:K, 4esv:L, 2vye:A, 2vye:B
5 6bbm:A 405 435 0.3410 0.3654 0.3402 1.03e-72
6 4nmn:A 425 445 0.3180 0.3247 0.3101 5.77e-60 4nmn:B
7 5lkm:A 390 61 0.0576 0.0641 0.4098 0.013 5lkm:C
8 2xsz:E 315 184 0.1106 0.1524 0.2609 0.055 6fo1:D, 6fo1:E, 6fo1:F, 6k0r:D, 6k0r:E, 6k0r:F, 6k0r:J, 6k0r:K, 6k0r:L, 6qi8:D, 3uk6:A, 3uk6:D, 3uk6:E, 3uk6:F, 3uk6:H, 3uk6:I, 3uk6:J, 3uk6:K, 2xsz:D, 2xsz:F
9 4v5z:Ag 163 51 0.0415 0.1104 0.3529 0.17 7oya:F2
10 5xxu:F 187 72 0.0461 0.1070 0.2778 0.23
11 8dtp:B 432 202 0.0991 0.0995 0.2129 0.23 8dtp:C, 8dtp:D, 8dtp:E, 8dtp:F, 8dtp:A, 8due:B, 8due:C, 8due:D, 8due:E, 8due:F, 8due:A, 8duo:A, 8duo:B, 8duo:C, 8duo:D, 8duo:E, 8duo:F, 8dvf:B, 8dvf:C, 8dvf:D, 8dvf:E, 8dvf:F, 8dvf:A, 8dvi:B, 8dvi:C, 8dvi:D, 8dvi:E, 8dvi:F, 8dvi:A, 8dw6:B, 8dw6:C, 8dw6:D, 8dw6:E, 8dw6:F, 8dw6:A, 8g0z:B, 8g0z:C, 8g0z:D, 8g0z:E, 8g0z:F, 8g0z:A, 8gao:B, 8gao:C, 8gao:D, 8gao:E, 8gao:F, 8gao:A
12 5lkm:B 346 53 0.0461 0.0578 0.3774 0.25
13 8onh:I 343 175 0.1014 0.1283 0.2514 0.85
14 7xwi:B 224 56 0.0438 0.0848 0.3393 0.89 7xwh:A, 7xwh:B, 7xwh:C, 7xwh:D, 7xwi:A, 7xwi:C, 7xwi:D, 7xwj:A, 7xwj:B, 7xwj:C, 7xwj:D, 7xwk:A, 7xwk:B, 7xwk:C, 7xwk:D, 7xwl:A, 7xwl:B, 7xwl:C, 7xwl:D, 7xwm:A, 7xwm:B, 7xwm:C, 7xwm:D, 7xwn:A, 7xwn:B, 7xwn:C, 7xwn:D
15 8ppk:F 192 51 0.0392 0.0885 0.3333 0.98 7a01:N3, 7a09:e, 5a2q:F, 5aj0:BF, 9bdl:AS05, 9bdn:AS05, 9bdp:AS05, 8bhf:G3, 9bkd:V, 9bln:V, 8btk:Ae, 7cpu:SF, 7cpv:SF, 4d5l:F, 4d61:F, 6d90:GG, 6d9j:GG, 9f1b:Ae, 9f1c:Ae, 9f1d:Ae, 6fec:U, 5flx:F, 6g18:F, 6g4s:F, 6g4w:F, 6g51:F, 6g53:F, 6g5h:F, 6g5i:F, 8g5y:SF, 8g5z:SF, 8g60:SF, 8g61:SF, 8g6j:SF, 8glp:SF, 6gz3:BF, 6gz4:BF, 6gz5:BF, 6hcf:G1, 6hcj:G2, 6hcm:G1, 6hcq:G2, 8ifd:2r, 8ife:2r, 6ip5:2r, 6ip6:2r, 6ip8:2r, 3j7p:SF, 3j7r:SF, 3jag:FF, 3jah:FF, 3jai:FF, 3jaj:SF, 3jan:SF, 8jdj:2, 8jdk:2, 8jdl:2, 8jdm:2, 7jqb:G, 7jqc:G, 5k0y:U, 8k2c:SF, 7k5i:F, 4kzx:F, 4kzy:F, 4kzz:F, 5lks:SF, 7ls1:s2, 7ls2:s2, 5lzs:FF, 5lzt:FF, 5lzu:FF, 5lzv:FF, 5lzw:FF, 5lzx:FF, 5lzy:FF, 5lzz:FF, 7mdz:FF, 7mq8:L5, 7mq9:L5, 7mqa:L5, 6mtb:FF, 6mtc:FF, 6mtd:FF, 6mte:FF, 7nwg:G2, 7nwh:FF, 7nwi:FF, 7o7y:Ae, 7o7z:Ae, 7o80:Ae, 7o81:Ae, 5oa3:F, 6ole:SF, 6olf:SF, 6olg:BF, 6oli:SF, 6olz:BF, 6om0:SF, 6om7:SF, 7oyb:F2, 7oyc:F2, 7oyd:FF, 8oz0:f, 8p03:H, 8p09:H, 8p2k:Ae, 6p4g:G, 6p4h:G, 6p5i:G, 6p5j:G, 6p5k:G, 6p5n:G, 8pj1:V, 8pj2:V, 8pj3:V, 8pj4:V, 8pj5:V, 8pj6:V, 8ppl:AF, 8q7z:Ae, 8q87:Ae, 7qgg:SF, 8qoi:SF, 7qp6:V, 7qp7:V, 7qvp:SF, 7qvp:RF, 6qzp:SF, 7r4x:F, 6r5q:y, 6r6g:y, 6r6p:BB, 6r7q:y, 8scb:FF, 6sgc:G1, 7syg:G, 7syh:G, 7syi:G, 7syj:G, 7syk:G, 7syl:G, 7sym:G, 7syn:G, 7syo:G, 7syp:G, 7syq:G, 7syr:G, 7sys:G, 7syt:G, 7syu:G, 7syv:G, 7syw:G, 7syx:G, 5t2c:As, 8t4s:F, 7toq:AS05, 7tor:AS05, 7tql:K, 7ucj:FF, 7uck:FF, 4ug0:SF, 4ujc:CF, 4ujd:CF, 4uje:BF, 4v6w:AF, 4v6x:AF, 5vyc:F1, 5vyc:F2, 5vyc:F5, 5vyc:F3, 5vyc:F4, 5vyc:F6, 6w2s:G, 6w2t:G, 7wtt:F, 7wtu:F, 7wtv:F, 7wtw:F, 7wtx:F, 7wtz:F, 7wu0:F, 6xa1:SF, 7xnx:SF, 7xny:SF, 8xsx:SF, 8xsy:SF, 8xsz:SF, 6xu6:AF, 6xu7:AF, 8xxl:SF, 8xxm:SF, 8xxn:SF, 6y0g:SF, 8y0w:SF, 8y0x:SF, 6y2l:SF, 6y57:SF, 6yal:H, 6yam:H, 6yan:H, 6ybs:V, 8yoo:SF, 8yop:SF, 6z6l:SF, 6z6m:SF, 6z6n:SF, 7zjw:SQ, 7zjx:SQ, 6zlw:K, 6zm7:SF, 6zme:SF, 6zmi:SF, 6zmo:SF, 6zmt:K, 6zmw:V, 6zn5:K, 6zoj:F, 6zol:F, 6zon:e, 6zp4:e, 6zuo:F, 6zv6:F, 6zvh:F, 6zvj:e, 6zvk:N3, 6zxd:F, 6zxe:F, 6zxf:F, 6zxg:F, 6zxh:F
16 6xu8:AF 189 131 0.0714 0.1640 0.2366 1.0
17 5lz6:A 126 30 0.0300 0.1032 0.4333 2.1 6q67:A, 6q68:A
18 8auv:d 194 51 0.0392 0.0876 0.3333 2.1 8b2l:d1, 7qiy:E, 7qiz:OA
19 7v3x:V 437 82 0.0576 0.0572 0.3049 2.7 7v3x:U
20 8ip8:ka 193 140 0.0691 0.1554 0.2143 3.1 8ip9:ka, 8ipa:ka, 8ipb:ka, 8jiw:BF, 8r57:P, 4v3p:SF, 4v7e:BF
21 6d97:A 522 43 0.0230 0.0192 0.2326 3.4 6d97:B, 6d97:C, 6d97:D
22 7v3x:O 461 68 0.0484 0.0456 0.3088 3.5 7dy2:D, 7dy2:G, 7dy2:H, 7dy2:L, 7dye:A, 7dye:B, 7dyi:A, 7dyi:B, 7dyj:A, 7dyj:B, 7dyk:A, 7dyk:B, 7v3x:N, 7v3x:P, 7v3x:X, 7v3x:S, 7wdc:A, 7wdc:B, 8wv8:A, 8wv8:B, 8wve:A, 8wve:B
23 8i23:F 230 111 0.0714 0.1348 0.2793 5.0
24 8rbx:f 544 41 0.0369 0.0294 0.3902 6.6 8rbz:f
25 1ykd:A 383 49 0.0323 0.0366 0.2857 6.7 1ykd:B
26 6zu5:LG0 202 24 0.0300 0.0644 0.5417 7.4
27 8gbj:D 308 56 0.0484 0.0682 0.3750 7.7 8faz:D, 8ouy:C, 8ouz:C

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218