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BioLiP
>protein
TLYVSQLNEKINMQRLRVNLFLLFATFGEVVSMNFKKQRGQAFITMRTIDQASLAQISLNGERFFGKPLKVEF

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b9v:Y 88 75 1.0000 0.8295 0.9733 5.96e-47 6bk8:r, 7dco:p, 6exn:Y, 6g90:Y, 5gmk:a, 6j6g:a, 6j6h:a, 6j6n:a, 6j6q:a, 5lj3:Y, 5lj5:Y, 5mq0:Y, 5nrl:Y, 7oqb:Y, 7oqe:Y, 5wsg:X, 5y88:p, 5ylz:p, 5zwm:p, 5zwo:p
2 8ro1:p 76 75 0.4110 0.3947 0.4000 4.70e-14
3 3jb9:k 89 76 0.4110 0.3371 0.3947 8.21e-14
4 7abg:B 169 76 0.3425 0.1479 0.3289 1.04e-11 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
5 4pkd:B 240 76 0.3425 0.1042 0.3289 4.41e-11 1aud:A, 7b0y:c, 3bo2:A, 3bo3:A, 3bo4:A, 4c4w:A, 4c4w:E, 3cul:A, 3cul:B, 3cun:A, 3cun:B, 7d7v:C, 5ddo:G, 5ddo:C, 5ddp:D, 5ddp:C, 5ddq:D, 5ddq:C, 5ddr:D, 5ddr:C, 7dlz:A, 7dlz:B, 1drz:A, 7dwh:A, 7dwh:B, 1dz5:A, 1dz5:B, 3egz:A, 5fj4:A, 5fj4:E, 3g8s:A, 3g8s:B, 3g8s:C, 3g8s:D, 3g8t:A, 3g8t:B, 3g8t:C, 3g8t:D, 3g96:A, 3g96:B, 3g96:C, 3g96:D, 3g9c:A, 3g9c:B, 3g9c:C, 3g9c:D, 8gxb:C, 8gxb:D, 8gxb:F, 8gxc:C, 8gxc:D, 8gxc:F, 3hhn:B, 3hhn:D, 3iin:A, 3irw:P, 3iwn:C, 3iwn:D, 8jy0:A, 8jy0:C, 8jy0:E, 3k0j:A, 3k0j:B, 3l3c:A, 3l3c:B, 3l3c:C, 3l3c:D, 6las:E, 6las:D, 6las:C, 6lau:E, 6lau:D, 6lau:C, 6lax:D, 6lax:E, 6lax:C, 6laz:D, 6laz:E, 6laz:C, 1m5k:C, 1m5k:F, 1m5o:C, 1m5o:F, 1m5p:C, 1m5p:F, 1m5v:C, 1m5v:F, 3mum:P, 3mur:P, 3mut:P, 3muv:P, 3mxh:P, 2nz4:A, 2nz4:B, 2nz4:C, 2nz4:D, 2oih:A, 2oj3:A, 3p49:B, 4pr6:A, 4prf:A, 7qr3:A, 7qr3:B, 7qr4:A, 6qx9:1A, 3r1h:A, 3r1h:D, 3r1l:A, 3r1l:D, 1sj3:P, 1sj4:P, 1sjf:A, 6sqn:A, 6sqn:B, 6sqn:C, 6sqq:AAA, 6sqq:BBB, 6sqq:CCC, 1u6b:A, 3ucu:P, 3ucz:P, 3ud3:P, 3ud4:P, 1urn:A, 1urn:B, 1urn:C, 1vbx:A, 1vby:A, 1vbz:A, 1vc0:A, 1vc5:A, 1vc6:A, 7vpx:M, 4w90:B, 4w92:B, 1zzn:A
6 6xh2:A 93 76 0.3151 0.2473 0.3026 5.10e-10 6cmn:A, 3k0j:D, 3k0j:C, 6xh0:A, 6xh1:A, 6xh3:A
7 6f4h:C 96 76 0.3699 0.2812 0.3553 2.28e-08 6f4g:B, 6f4g:E, 6f4h:A, 6f4h:E
8 2adc:A 208 73 0.3836 0.1346 0.3836 2.02e-06
9 6gd2:A 84 60 0.3014 0.2619 0.3667 3.56e-05 6g2k:A, 6g2k:B, 6gc5:A, 6gc5:B, 6gc5:C, 6gc5:D, 6gd2:B, 6gd3:B, 6gd3:C
10 2mb0:B 95 77 0.3151 0.2421 0.2987 7.51e-04
11 2fy1:A 108 73 0.3288 0.2222 0.3288 0.001
12 7s7b:C 79 78 0.3014 0.2785 0.2821 0.003 7s7b:G, 7s7c:C
13 2xb2:D 89 78 0.2466 0.2022 0.2308 0.004 2xb2:Z
14 8i0v:4 161 77 0.3151 0.1429 0.2987 0.004
15 8i0v:4 161 79 0.2329 0.1056 0.2152 0.32
16 7zew:A 117 76 0.2740 0.1709 0.2632 0.011 7zex:A
17 7q33:A 93 76 0.3288 0.2581 0.3158 0.017 6pai:D, 6q0r:D, 6q0v:D, 6q0w:D, 6sj7:C, 6ud7:C, 6ue5:C
18 5mqf:o 223 78 0.2740 0.0897 0.2564 0.024 6id1:y, 7w59:y, 7w5a:y, 7w5b:y
19 2rra:A 99 61 0.2055 0.1515 0.2459 0.058 2kxn:B
20 2mgz:A 94 57 0.2329 0.1809 0.2982 0.059
21 6ojt:B 481 58 0.2740 0.0416 0.3448 0.20 6ojr:A, 6ojt:A, 6ojw:B, 6ojw:A
22 1xrk:B 121 47 0.1781 0.1074 0.2766 0.26 1xrk:A, 2zhp:A, 2zhp:B
23 5x8p:v 190 74 0.2740 0.1053 0.2703 0.39 5mmj:v, 5mmm:v, 5x8r:v
24 7uj1:B 270 51 0.2192 0.0593 0.3137 0.58 7pu5:B, 7pu5:D, 7pu5:H, 7pu5:J, 7pu5:L, 7sp0:B, 7uj1:A
25 6r5k:H 394 74 0.2740 0.0508 0.2703 0.69 6r5k:D, 6r5k:F
26 4ed5:B 169 78 0.3151 0.1361 0.2949 0.71 4ed5:A
27 3bh3:D 245 47 0.1918 0.0571 0.2979 1.9 3bh3:A, 3bh3:B, 3bh3:C
28 6snj:A 131 37 0.1644 0.0916 0.3243 2.8 6gbm:B
29 1h5q:A 260 44 0.1781 0.0500 0.2955 3.2 1h5q:B, 1h5q:C, 1h5q:D, 1h5q:E, 1h5q:F, 1h5q:G, 1h5q:H, 1h5q:I, 1h5q:J, 1h5q:K, 1h5q:L
30 2mkc:A 118 78 0.2603 0.1610 0.2436 4.5 2my3:A
31 5t9g:C 811 41 0.1644 0.0148 0.2927 4.9 5t9g:A, 5t9g:B, 5t9g:D
32 7dco:X 128 78 0.2603 0.1484 0.2436 5.0 5gm6:V, 5zwm:X
33 7pw9:A 1952 53 0.2192 0.0082 0.3019 5.6 7pw4:A, 7pw5:A, 7pw6:A, 7pw7:A, 7pw8:A, 6z3r:A
34 6syt:A 1896 53 0.2192 0.0084 0.3019 6.1
35 7xgx:A 607 46 0.1781 0.0214 0.2826 7.2 7xgx:B
36 2mqp:A 118 41 0.1781 0.1102 0.3171 7.6 7evr:A, 7evr:C
37 7mjr:A 899 27 0.1233 0.0100 0.3333 8.0
38 2xe5:B 343 19 0.1370 0.0292 0.5263 8.7 2xe5:D
39 9gpj:A 184 57 0.2192 0.0870 0.2807 9.4 6dcl:A, 6dcl:B, 9f4d:A, 9f4e:A, 9f4f:A, 9f4g:A, 9f4h:A, 9f4j:A, 9f4k:A, 9f4l:A, 9f4m:A, 9f4n:A, 9f4o:A, 9f4p:A, 9f4q:A, 9f4r:A, 9f4s:A, 9f4t:A, 9f4u:A, 9f4v:A, 9f4w:A, 9f4x:A, 9f4y:A, 9f4z:A, 9f50:A, 9f51:A, 9f52:A, 9f53:A, 9f54:A, 9f55:A, 9f5c:A, 9f5d:A, 9f5e:A, 9f5f:A, 9f5g:A, 9f5k:A, 9f7f:A, 9f7h:A, 5mpg:A, 5mpl:A, 1pgz:A, 1po6:A, 8rzv:A, 1u1k:A, 1u1l:A, 1u1m:A, 1u1n:A, 1u1o:A, 1u1p:A, 1u1q:A, 1u1r:A, 2up1:A, 4yoe:A
40 5fvn:A 342 19 0.1370 0.0292 0.5263 10.0 5fvn:B, 5fvn:C, 5fvn:D, 5fvn:E, 5fvn:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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