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BioLiP
>protein
TLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQYAHSK
SKIIERIVA

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jb9:k 89 89 1.0000 1.0000 1.0000 6.11e-62
2 7abg:B 169 87 0.5281 0.2781 0.5402 1.97e-28 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
3 8ro1:p 76 75 0.3933 0.4605 0.4667 4.00e-25
4 4pkd:B 240 87 0.4382 0.1625 0.4483 1.79e-23 1aud:A, 7b0y:c, 3bo2:A, 3bo3:A, 3bo4:A, 4c4w:A, 4c4w:E, 3cul:A, 3cul:B, 3cun:A, 3cun:B, 7d7v:C, 5ddo:G, 5ddo:C, 5ddp:D, 5ddp:C, 5ddq:D, 5ddq:C, 5ddr:D, 5ddr:C, 7dlz:A, 7dlz:B, 1drz:A, 7dwh:A, 7dwh:B, 1dz5:A, 1dz5:B, 3egz:A, 5fj4:A, 5fj4:E, 3g8s:A, 3g8s:B, 3g8s:C, 3g8s:D, 3g8t:A, 3g8t:B, 3g8t:C, 3g8t:D, 3g96:A, 3g96:B, 3g96:C, 3g96:D, 3g9c:A, 3g9c:B, 3g9c:C, 3g9c:D, 8gxb:C, 8gxb:D, 8gxb:F, 8gxc:C, 8gxc:D, 8gxc:F, 3hhn:B, 3hhn:D, 3iin:A, 3irw:P, 3iwn:C, 3iwn:D, 8jy0:A, 8jy0:C, 8jy0:E, 3k0j:A, 3k0j:B, 3l3c:A, 3l3c:B, 3l3c:C, 3l3c:D, 6las:E, 6las:D, 6las:C, 6lau:E, 6lau:D, 6lau:C, 6lax:D, 6lax:E, 6lax:C, 6laz:D, 6laz:E, 6laz:C, 1m5k:C, 1m5k:F, 1m5o:C, 1m5o:F, 1m5p:C, 1m5p:F, 1m5v:C, 1m5v:F, 3mum:P, 3mur:P, 3mut:P, 3muv:P, 3mxh:P, 2nz4:A, 2nz4:B, 2nz4:C, 2nz4:D, 2oih:A, 2oj3:A, 3p49:B, 4pr6:A, 4prf:A, 7qr3:A, 7qr3:B, 7qr4:A, 6qx9:1A, 3r1h:A, 3r1h:D, 3r1l:A, 3r1l:D, 1sj3:P, 1sj4:P, 1sjf:A, 6sqn:A, 6sqn:B, 6sqn:C, 6sqq:AAA, 6sqq:BBB, 6sqq:CCC, 1u6b:A, 3ucu:P, 3ucz:P, 3ud3:P, 3ud4:P, 1urn:A, 1urn:B, 1urn:C, 1vbx:A, 1vby:A, 1vbz:A, 1vc0:A, 1vc5:A, 1vc6:A, 7vpx:M, 4w90:B, 4w92:B, 1zzn:A
5 6f4h:C 96 87 0.4719 0.4375 0.4828 3.10e-21 6f4g:B, 6f4g:E, 6f4h:A, 6f4h:E
6 6xh2:A 93 83 0.3933 0.3763 0.4217 5.05e-21 6cmn:A, 3k0j:D, 3k0j:C, 6xh0:A, 6xh1:A, 6xh3:A
7 7b9v:Y 88 84 0.3708 0.3750 0.3929 8.55e-16 6bk8:r, 7dco:p, 6exn:Y, 6g90:Y, 5gmk:a, 6j6g:a, 6j6h:a, 6j6n:a, 6j6q:a, 5lj3:Y, 5lj5:Y, 5mq0:Y, 5nrl:Y, 7oqb:Y, 7oqe:Y, 5wsg:X, 5y88:p, 5ylz:p, 5zwm:p, 5zwo:p
8 2leb:A 101 80 0.2921 0.2574 0.3250 1.98e-05 2lec:A
9 2mkc:A 118 84 0.2584 0.1949 0.2738 4.62e-05 2my3:A
10 7dco:X 128 84 0.2584 0.1797 0.2738 6.18e-05 5gm6:V, 5zwm:X
11 3lqv:B 115 64 0.2584 0.2000 0.3594 3.26e-04 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
12 7abi:P 237 82 0.2472 0.0928 0.2683 0.026 7aav:P, 7abg:P
13 6snj:A 131 41 0.1573 0.1069 0.3415 0.063 6gbm:B
14 8ch6:U 295 79 0.2472 0.0746 0.2785 0.098 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P
15 2cjk:A 167 63 0.2022 0.1078 0.2857 0.12 2km8:C
16 7s7b:C 79 78 0.2809 0.3165 0.3205 0.16 7s7b:G, 7s7c:C
17 4v3p:LC 389 66 0.2022 0.0463 0.2727 0.32 8ip8:DB, 8ipa:DB, 8ipb:DB, 8jiv:CB, 4v7e:CB
18 6m75:A 167 65 0.2472 0.1317 0.3385 0.67
19 1fnx:H 174 66 0.2135 0.1092 0.2879 1.6 1fxl:A, 1g2e:A
20 8h6e:4R 106 84 0.1910 0.1604 0.2024 1.9 8h6j:4R, 8qp8:R, 8qp9:R, 8qpk:R, 6qw6:R, 6qx9:R, 8qxd:R, 8r08:R, 8r0a:R
21 8esq:o 137 77 0.1910 0.1241 0.2208 2.6 8esr:o, 8etg:o, 8eth:o, 8eti:o, 8eup:o, 8euy:o, 8ev3:o
22 7sgl:A 3852 85 0.2472 0.0057 0.2588 2.7
23 5y3r:C 3636 85 0.2472 0.0061 0.2588 2.8
24 6zha:A 3707 85 0.2472 0.0059 0.2588 2.8 6zh8:A
25 7sud:A 3740 85 0.2472 0.0059 0.2588 2.8
26 8ez9:L 3662 85 0.2472 0.0060 0.2588 2.8 8ez9:C
27 7su3:A 3802 85 0.2472 0.0058 0.2588 2.8
28 8ezb:C 3724 85 0.2472 0.0059 0.2588 2.8 8ezb:L
29 6zhe:F 3731 85 0.2472 0.0059 0.2588 2.8
30 7otm:A 3656 85 0.2472 0.0060 0.2588 2.9 7otp:A, 7otv:A, 7otw:A, 7oty:A
31 6zhe:A 3768 85 0.2472 0.0058 0.2588 2.9
32 7z87:A 3689 85 0.2472 0.0060 0.2588 2.9
33 3ax7:A 1225 52 0.2022 0.0147 0.3462 2.9 3ax7:B, 3ax9:A, 3ax9:B
34 1fo4:A 1299 52 0.2022 0.0139 0.3462 2.9 3am9:A, 3am9:B, 3amz:A, 3amz:B, 3b9j:B, 3b9j:C, 3b9j:J, 3b9j:K, 3bdj:A, 3bdj:B, 3etr:B, 3etr:C, 3etr:M, 3etr:N, 3eub:B, 3eub:C, 3eub:K, 3eub:L, 3eub:T, 3eub:U, 3eub:3, 3eub:4, 1fiq:B, 1fo4:B, 8j79:A, 8j79:B, 1n5x:A, 1n5x:B, 3nrz:B, 3nrz:C, 3nrz:K, 3nrz:L, 3ns1:B, 3ns1:C, 3ns1:K, 3ns1:L, 3nvv:B, 3nvv:C, 3nvv:K, 3nvv:L, 3nvw:B, 3nvw:C, 3nvw:K, 3nvw:L, 3nvy:B, 3nvy:C, 3nvy:K, 3nvy:L, 3nvz:B, 3nvz:C, 3nvz:K, 3nvz:L, 3sr6:B, 3sr6:C, 3sr6:K, 3sr6:L, 3una:A, 3una:B, 3unc:A, 3unc:B, 3uni:A, 3uni:B, 1v97:A, 1v97:B, 1vdv:A, 1vdv:B
35 7k0y:A 3669 85 0.2472 0.0060 0.2588 3.1
36 8eza:L 3720 85 0.2472 0.0059 0.2588 3.1 8eza:C, 7lt3:C, 7lt3:L
37 7k1j:A 3584 85 0.2472 0.0061 0.2588 3.1 7k19:A
38 7k1n:A 3634 85 0.2472 0.0061 0.2588 3.2 7z88:A
39 7k1k:A 3604 85 0.2472 0.0061 0.2588 3.2 7k1b:A
40 7k17:B 3645 85 0.2472 0.0060 0.2588 3.3 7k17:A
41 2y1r:J 95 56 0.1348 0.1263 0.2143 4.7
42 6dg0:B 84 82 0.2584 0.2738 0.2805 6.7 6dg0:A
43 3wky:A 655 48 0.1348 0.0183 0.2500 6.9 3wky:B
44 1tec:E 279 24 0.1236 0.0394 0.4583 7.0 2tec:E, 3tec:E, 1thm:A
45 6zns:A 635 41 0.1461 0.0205 0.3171 8.6
46 8gkp:C 282 25 0.1461 0.0461 0.5200 8.7 8gkp:D, 8gkq:C, 8u45:C
47 6n7p:A 186 47 0.1685 0.0806 0.3191 9.5 6n7r:A, 6n7x:A, 7oqc:B, 7oqe:B, 8w2o:A, 5zwn:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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