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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TLVPDLTATDLARHRWLTDNSWTRPTWTVAELEAAKAGRTISVVLPALNEEETVGGVVETIRPLLGGLVDELIVLDSGST
DDTEIRAMAAGARVISREVALPEVAPQPGKGEVLWRSLAATTGDIIVFIDSDLIDPDPMFVPKLVGPLLLSEGVHLVKGF
YRRGGRVTELVARPLLAALRPELTCVLQPLGGEYAGTRELLMSVPFAPGYGVEIGLLVDTYDRLGLDAIAQVNLGVRAHR
NRPLTDLAAMSRQVIATLFSRCGVPDSGVGLTQFFGFSPRTSEVSLVDRPPMNTLRGKLAAAL

The query sequence (length=303) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pe4:A 310 309 1.0000 0.9774 0.9806 0.0 7p8g:A, 7pd5:A, 7pdo:A, 7pho:A, 7pho:B, 7qi9:A, 7qi9:B, 7qib:A, 7qib:B, 7qoq:A, 7qoq:B
2 3ckq:A 302 290 0.7459 0.7483 0.7793 5.52e-158 3ckn:A, 3cko:A, 3ckv:A
3 4dec:A 284 281 0.7195 0.7676 0.7758 3.80e-153 4de7:A, 3e25:A, 5jsx:A, 5jt0:A, 5juc:A, 5jud:A, 4y6n:A, 4y6u:A, 4y7f:A, 4y7g:A, 4y9x:A
4 3f1y:A 318 308 0.3663 0.3491 0.3604 6.57e-56 3f1y:C, 3kia:A, 3kia:C, 3o3p:A, 3o3p:B
5 5mlz:A 355 194 0.1617 0.1380 0.2526 5.64e-08 5mm0:A, 5mm1:A
6 5eke:C 307 162 0.1353 0.1336 0.2531 4.78e-04 5eke:A, 5eke:B, 5eke:D, 5ekp:C, 5ekp:A, 5ekp:B, 5ekp:D
7 7msk:A 421 116 0.1023 0.0736 0.2672 0.002 7msk:B
8 2bo6:A 380 144 0.1452 0.1158 0.3056 0.019 2bo6:B, 2bo7:A, 2bo7:B, 2bo7:C, 2bo7:D, 2bo7:E, 2bo7:F, 2bo7:G, 2bo7:H, 2bo7:I, 2bo7:J, 2bo8:A, 2bo8:B, 2bo8:C, 2bo8:D, 2bo8:E, 2bo8:F, 2bo8:G, 2bo8:H, 2bo8:I, 2bo8:J, 2y4k:A, 2y4k:B, 2y4l:A, 2y4l:B, 2y4m:A, 2y4m:B
9 6yv8:A 346 119 0.1089 0.0954 0.2773 0.029 6yv8:B, 6yv9:A, 6yv9:B
10 2zu8:A 373 128 0.1122 0.0912 0.2656 0.28 2zu8:B, 2zu9:B, 2zu9:A
11 4fix:A 629 137 0.1254 0.0604 0.2774 1.3 4fix:B, 4fiy:A, 4fiy:B
12 3ajx:A 207 88 0.0924 0.1353 0.3182 1.4 3ajx:B, 3ajx:C, 3ajx:D
13 4jvo:A 336 95 0.0825 0.0744 0.2632 1.8 4jvo:B, 5k99:A, 5k99:B, 4mi1:A, 4mi1:B, 3t5m:A, 3t5m:B, 3tyx:A, 3tyx:B, 3u1b:A, 3u1b:B
14 6b1t:O 180 51 0.0627 0.1056 0.3725 1.8
15 7s78:U 165 51 0.0627 0.1152 0.3725 2.0
16 3bdz:A 397 113 0.0924 0.0705 0.2478 3.6 3bdz:B, 3be0:A, 3be0:B, 4fb2:A, 4fb2:B, 4fb2:C, 4fb2:D, 4fmx:A, 4fmx:B, 4fyz:A, 4fyz:B, 4l6g:A, 4l6g:B, 4l77:A, 4l77:B, 4lht:A, 4lht:B, 1t2b:A, 1t2b:B
17 7tau:V 188 61 0.0693 0.1117 0.3443 5.1
18 2yjp:A 247 29 0.0363 0.0445 0.3793 8.2 2yjp:B, 2yjp:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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