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BioLiP
>protein
TLVKCACEPCLCNVDPSKAIDRNGLYYCSEACADGHTGGSKGCGHTGCNCHG

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jjd:A 52 52 1.0000 1.0000 1.0000 1.27e-32
2 6grv:A 81 49 0.3654 0.2346 0.3878 4.04e-06 6gv6:A, 6gv7:A, 6gw8:A
3 6h25:J 868 21 0.1731 0.0104 0.4286 0.76 6d6q:K, 6d6r:K
4 8iuf:C2 196 15 0.1923 0.0510 0.6667 2.6 8iuj:c2, 8iuj:C2
5 6vxe:A 789 15 0.1538 0.0101 0.5333 5.0 6vxe:B, 6vxe:C, 6vxe:D, 6vxe:E, 6vxe:F, 6vxe:G, 6vxe:H
6 1igy:B 434 10 0.1154 0.0138 0.6000 5.7 1igy:D
7 2i0z:A 416 18 0.1923 0.0240 0.5556 6.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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