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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TLVHNWHLGRRMEYPYFESRPKHQFAAVFNINRCIACQTCTMACKSTWTFNKGQEFMWWNNVETKPYGGFPQSWDVKTLK
LIDSPDNIWYTDDKDKETSQYGTGAPYGTYEGDTIFEVAKKKNINQWAVGYIPEDKEWRSPNFGEDTAKSSNQPGEYSTL
PEHSRWFFYLQRICNHCTYPGCLAACPRKAIYKRKEDGIVLIDQKRCRGYRKCVEQCPYKKPMYRGLTRVSEKCIACYPR
IEGRDSLTDGRPMETRCMSACVGQIRLQGFLDDNPKNPITWLIRHQKIALPLYPQFGTEPNIYYIPPRWAPRAYLRQMFG
PGVDEAIEKFMVPSRELLAVMSLFRMTQTIVYEYKIEEGPKVFETEIHGKKFTMYNDTVIGFGEDGKEVVRTTVEEPIHI
RPDKHYNSI

The query sequence (length=409) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b04:A 409 409 1.0000 1.0000 1.0000 0.0 7b04:D, 7b04:G, 7b04:J, 7b04:M, 7b04:P, 7b04:S, 7b04:V
2 5ch7:B 329 292 0.2934 0.3647 0.4110 5.21e-68 5ch7:D, 5ch7:F, 5chc:B, 5chc:D, 5chc:F, 5e7o:B, 5e7o:D, 5e7o:F, 5e7o:H, 5e7o:J, 5e7o:L, 4ydd:B, 4ydd:D, 4ydd:F
3 2ivf:B 337 336 0.3007 0.3650 0.3661 2.28e-62
4 3egw:B 509 403 0.3007 0.2417 0.3052 6.19e-46 3ir5:B, 3ir6:B, 3ir7:B, 1q16:B, 1r27:B, 1r27:D, 1siw:B, 1y4z:B, 1y5i:B, 1y5l:B, 1y5n:B
5 2vpw:F 193 132 0.1027 0.2176 0.3182 3.64e-11 2vpw:B, 2vpx:F, 2vpx:B, 2vpy:F, 2vpy:B, 2vpz:F, 2vpz:B
6 2vpw:F 193 156 0.0807 0.1710 0.2115 0.23 2vpw:B, 2vpx:F, 2vpx:B, 2vpy:F, 2vpy:B, 2vpz:F, 2vpz:B
7 6cz7:B 234 187 0.1125 0.1966 0.2460 4.40e-11 6cz7:D, 6cz8:D, 6cz8:B, 6cz9:B, 6cz9:D, 6cza:B, 6cza:D
8 4v4c:B 274 194 0.1198 0.1788 0.2526 1.24e-07 4v4c:D, 4v4c:F, 4v4c:H, 4v4c:J, 4v4c:L, 4v4c:N, 4v4c:P, 4v4c:R, 4v4c:T, 4v4c:V, 4v4c:X, 4v4d:B, 4v4d:D, 4v4d:F, 4v4d:H, 4v4d:J, 4v4d:L, 4v4d:N, 4v4d:P, 4v4d:R, 4v4d:T, 4v4d:V, 4v4d:X, 4v4e:B, 4v4e:D, 4v4e:F, 4v4e:H, 4v4e:J, 4v4e:L, 4v4e:N, 4v4e:P, 4v4e:R, 4v4e:T, 4v4e:V, 4v4e:X
9 1kqf:B 289 68 0.0562 0.0796 0.3382 3.96e-06 1kqg:B
10 6f0k:B 961 136 0.0929 0.0395 0.2794 0.001
11 6f0k:B 961 45 0.0318 0.0135 0.2889 1.2
12 6lod:B 929 193 0.1100 0.0484 0.2332 0.005 6loe:B
13 6btm:B 948 204 0.1076 0.0464 0.2157 0.007
14 7qv7:A 174 46 0.0416 0.0977 0.3696 0.009 7qv7:G
15 8c0z:C 158 64 0.0489 0.1266 0.3125 0.021 8c0z:F
16 6x6u:B 167 69 0.0489 0.1198 0.2899 0.063 6x1o:B, 6x1o:D, 6x6u:D
17 7qv7:B 183 46 0.0367 0.0820 0.3261 0.10 7qv7:C, 7qv7:J, 7qv7:N, 7qv7:P, 7qv7:X
18 7z0s:B 170 55 0.0391 0.0941 0.2909 0.19 7z0t:B
19 1h0h:B 214 81 0.0587 0.1121 0.2963 0.19 1h0h:L
20 1clf:A 55 53 0.0416 0.3091 0.3208 0.27
21 8a8o:D 102 51 0.0342 0.1373 0.2745 0.30 8a8o:C
22 8k9e:B 951 144 0.0831 0.0358 0.2361 0.45 8k9f:B, 8x2j:B
23 8k9e:B 951 45 0.0269 0.0116 0.2444 4.5 8k9f:B, 8x2j:B
24 2cst:A 411 142 0.0905 0.0900 0.2606 0.60 2cst:B
25 7wfg:I 160 44 0.0367 0.0938 0.3409 0.70 7wg5:I
26 6hum:I 193 55 0.0440 0.0933 0.3273 0.71 6khi:I, 6khj:I, 6l7o:I, 6l7p:I, 6nbq:I, 6nbx:I, 6nby:I, 6tjv:I
27 8bqg:B 214 81 0.0538 0.1028 0.2716 0.71 8bqh:B, 8bqi:B, 8bqj:B, 8bqk:B, 8bql:B, 8cm4:B, 8cm4:D, 8cm5:B, 8cm5:D, 8cm5:L, 8cm5:S, 8cm6:B, 8cm6:D, 8cm7:B, 8rc8:B, 8rc9:B, 8rca:B, 8rcb:B, 8rcc:B, 8rcg:B, 6sdr:B, 6sdv:B, 7z5o:BBB
28 7bkb:L 79 61 0.0489 0.2532 0.3279 0.77 7bkb:l, 7bkc:L, 7bkc:l
29 7bkb:L 79 20 0.0220 0.1139 0.4500 2.8 7bkb:l, 7bkc:L, 7bkc:l
30 7zc6:B 202 37 0.0342 0.0693 0.3784 1.0
31 1ydn:A 283 64 0.0465 0.0671 0.2969 1.7 1ydn:B, 1ydn:C, 1ydn:D
32 8a6t:B 630 45 0.0440 0.0286 0.4000 2.1 8a6t:E, 8bew:B, 8bew:E
33 3mm5:B 363 42 0.0293 0.0331 0.2857 3.4 3mm5:E, 3mm6:B, 3mm6:E, 3mm7:B, 3mm7:E, 3mm8:B, 3mm8:E, 3mm9:B, 3mm9:E, 3mma:B, 3mma:E, 3mmb:B, 3mmb:E, 3mmc:B, 3mmc:E
34 7qv7:D 448 21 0.0269 0.0246 0.5238 4.5 7qv7:K, 7qv7:Q, 7qv7:R, 7qv7:V, 7qv7:Z
35 6b8w:B 95 44 0.0318 0.1368 0.2955 4.8
36 1dwl:A 59 40 0.0342 0.2373 0.3500 5.0
37 7p8n:B 613 48 0.0391 0.0261 0.3333 5.0 7p5h:B, 7p5h:E, 7p5h:b, 7p5h:e, 7p8n:b, 7p91:b, 7p91:B, 7p92:B
38 2bs2:B 239 46 0.0367 0.0628 0.3261 5.4 2bs2:E, 2bs3:B, 2bs3:E, 2bs4:B, 2bs4:E, 1e7p:B, 1e7p:E, 1e7p:H, 1e7p:K, 1qlb:B, 1qlb:E
39 6qw6:5J 803 79 0.0538 0.0274 0.2785 6.2 8h6e:4G, 8h6j:4G, 8h6k:4G, 8h6l:4G, 8qp8:N, 6qx9:5J, 8y6o:G
40 8r09:N 834 79 0.0538 0.0264 0.2785 6.9 6ahd:N, 5o9z:G, 8q7n:N, 8qo9:N, 8qpe:N, 8qzs:N, 8r0b:N, 8rc0:E, 8rm5:N
41 7npa:A 618 82 0.0562 0.0372 0.2805 9.0 7npa:B, 7npa:C, 7npa:D, 7npa:E, 7npa:F, 7npa:G, 7npa:H, 7npa:I, 7npa:J, 7npa:K, 7npa:L, 7npa:M, 7npa:N, 7npa:O, 7npa:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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