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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TLSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSI
ESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTREIIDIGHVGEVTGVNVGL
LNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIY
GGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISN

The query sequence (length=288) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2buf:C 298 296 1.0000 0.9664 0.9730 0.0 2buf:A, 2buf:B, 2buf:D, 2buf:E, 2buf:F, 2buf:G, 2buf:H, 2buf:I, 2buf:J, 2buf:L
2 2buf:K 273 288 0.9479 1.0000 0.9479 0.0
3 2bty:A 282 276 0.5000 0.5106 0.5217 5.38e-99 2bty:B, 2bty:C
4 2v5h:B 289 283 0.5000 0.4983 0.5088 4.40e-95 2jj4:A, 2jj4:B, 2v5h:A, 2v5h:C, 2v5h:D, 2v5h:E, 2v5h:F
5 2rd5:B 283 279 0.4514 0.4594 0.4659 2.02e-80 2rd5:A, 4usj:A, 4usj:B
6 2ap9:A 299 279 0.4653 0.4482 0.4803 7.54e-73 7nln:A, 7nln:B, 7nlo:A, 7nlp:A, 7nlr:A, 7nlt:A, 7nlw:A, 7nlx:A, 7nly:A, 7nlz:A, 7nm0:A, 7nn8:A, 7nnb:A
7 3t7b:B 258 260 0.2882 0.3217 0.3192 2.02e-28 3t7b:A
8 3wwm:A 269 255 0.2604 0.2788 0.2941 4.60e-27
9 1gs5:A 258 228 0.2535 0.2829 0.3202 1.15e-26 1gsj:A, 1oh9:A, 1oha:A, 1ohb:A, 2x2w:A, 2x2w:B
10 3s6h:A 436 274 0.2812 0.1858 0.2956 1.54e-24 4kzt:A, 4kzt:B, 4kzt:X, 4kzt:Y, 3s6g:B, 3s6g:Y, 3s6h:X, 3s6h:B, 3s6h:Y
11 3l86:A 245 230 0.2708 0.3184 0.3391 4.78e-24
12 3b8g:A 424 275 0.2604 0.1769 0.2727 1.02e-19 3d2m:A, 3d2p:A, 3d2p:B, 4i49:A, 2r8v:A, 2r98:A
13 4ab7:H 422 283 0.2708 0.1848 0.2756 1.43e-18 4ab7:D, 3zzf:A, 3zzf:B, 3zzf:C, 3zzf:D, 3zzh:A, 3zzh:B, 3zzh:C, 3zzh:D
14 2we4:A 309 296 0.2396 0.2233 0.2331 1.76e-04 1b7b:A, 1b7b:B, 1b7b:C, 1b7b:D, 2we4:B, 2we4:C, 2we4:D, 2we5:A, 2we5:B, 2we5:C
15 1e19:A 313 60 0.0764 0.0703 0.3667 0.006 1e19:B
16 4jz7:A 285 259 0.2153 0.2175 0.2394 0.017 4jz7:B
17 7n63:A 362 71 0.0833 0.0663 0.3380 0.020
18 5n1j:A 206 148 0.1250 0.1748 0.2432 0.16 5n1j:B, 5n1j:C, 5n1j:D, 5n1p:A, 5n1p:D, 5n1p:B, 5n1p:C, 5nc6:A, 5nc6:B, 5nc6:C, 5nc6:D, 5nc9:A, 5nc9:B, 5nc9:C, 5nc9:D, 5ncd:A, 5ncd:B, 5ncd:C, 5ncd:D, 5nek:A, 5nek:B, 5nek:C, 5nek:D, 5nel:A, 5nel:B, 5nel:C, 5nel:D
19 3bb8:A 420 177 0.1667 0.1143 0.2712 0.21 3bb8:B
20 4axs:A 291 83 0.0868 0.0859 0.3012 0.22
21 8tpt:B 571 172 0.1285 0.0648 0.2151 0.71
22 4q0w:B 301 75 0.0799 0.0764 0.3067 0.89 4q0r:A, 4q10:A, 4q10:B
23 4jz7:C 316 57 0.0660 0.0601 0.3333 0.99 4jz7:D, 4jz8:A, 4jz8:B, 4jz8:C, 4jz8:D, 4jz9:A, 4jz9:B, 4jz9:C, 4jz9:D, 4olc:A, 4olc:C
24 4jz7:C 316 75 0.0764 0.0696 0.2933 5.7 4jz7:D, 4jz8:A, 4jz8:B, 4jz8:C, 4jz8:D, 4jz9:A, 4jz9:B, 4jz9:C, 4jz9:D, 4olc:A, 4olc:C
25 4bts:B4 221 27 0.0451 0.0588 0.4815 1.2 4bts:A4, 4bts:C4, 4bts:D4, 5jpq:o, 4v5o:A4, 4v5o:B4
26 6oy3:B 594 180 0.1250 0.0606 0.2000 1.3 6oy3:A, 8tpn:A, 8tpn:B, 8tpq:A, 8tpq:B, 8tps:A, 8tps:B, 8tpt:A
27 3ktb:D 104 51 0.0486 0.1346 0.2745 2.3
28 8tpm:B 615 181 0.1285 0.0602 0.2044 3.2 8tpm:A, 8tpo:B, 8tpo:A, 8tpp:A, 8tpp:B, 8tpr:A, 8tpr:B
29 4ztc:A 385 61 0.0625 0.0468 0.2951 3.8 1o61:A, 1o61:B, 1o69:A, 1o69:B
30 4q0z:A 322 90 0.0938 0.0839 0.3000 4.4 4q0w:A, 4q0z:B, 4q0z:E, 4q0z:F
31 3s1s:A 870 112 0.1181 0.0391 0.3036 9.0
32 3q34:A 174 61 0.0625 0.1034 0.2951 9.4 3q34:B, 3q34:C, 3q34:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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