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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TLSPAQVDEYRKNGFLVQEHVFDEEEIELLRAEAAQEFASGGERVTVEQNTGIVRGVHGCHLYSEVFGRLVRSPRLLPIA
RQLLRDDVYVHQFKIIAKRAFKGEWEWHQDYTFWHHEDGMPAPRALSAAIFLDEVTEFNGPLTFVPGGHGSGMILKYSLD
VETMRGLIERNGMVAPKGPRGSVLWFDANIPHSSVPNISPFDRGLVLITYNSVENKTDVTRGTRPEWLAARDFTPLTALQ
ATSF

The query sequence (length=244) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dzz:B 268 261 0.9959 0.9067 0.9310 2.03e-177 7dt0:A, 7dt0:B, 7dt0:C, 7dt0:D, 7dt0:E, 7dt0:F, 7dt0:G, 7dzz:A, 7e00:A, 7e00:B, 7e01:A, 7e06:A, 7e06:B, 7e07:A, 7e07:B, 7e08:A, 7e09:A, 8h7v:A, 8h7v:B, 8h7y:A, 8h7y:B, 8h81:A, 8h85:A
2 7dt0:H 241 244 0.9754 0.9876 0.9754 6.63e-177
3 5nci:B 264 254 0.4139 0.3826 0.3976 2.02e-63 5nci:A, 5ncj:A, 5ncj:B
4 3emr:A 279 246 0.3730 0.3262 0.3699 3.34e-45
5 4q5o:A 282 238 0.3648 0.3156 0.3739 2.16e-42 4mhu:A, 4mhu:B, 4q5o:B
6 3obz:A 290 199 0.2213 0.1862 0.2714 4.12e-10
7 4xac:A 245 225 0.2295 0.2286 0.2489 1.26e-06
8 5erl:D 258 146 0.1639 0.1550 0.2740 0.003 5ep9:A, 5ep9:B, 5ep9:C, 5ep9:D, 5equ:A, 5equ:B, 5equ:C, 5equ:D, 5erl:A, 5erl:B, 5erl:C
9 3gjb:B 271 207 0.1762 0.1587 0.2077 0.099 3gjb:A
10 7wst:A 601 114 0.0902 0.0366 0.1930 0.10 7wsr:A, 7wsr:B, 7wst:B, 7wsu:A, 7wsu:B
11 6s0v:B 284 92 0.1148 0.0986 0.3043 0.16 7cl3:A, 7cl3:B, 7cl3:C, 7cl3:D, 7cl3:E, 7cl3:F, 7cl5:A, 7cl5:B, 7cl5:C, 7cl5:D, 7cl5:E, 7cl5:F, 7cl6:A, 7cl6:B, 7cl6:C, 7cl6:D, 7cl6:E, 7cl6:F, 6s0s:A, 6s0s:B, 6s0s:C, 6s0s:D, 6s0s:E, 6s0s:F, 6s0u:A, 6s0u:B, 6s0u:C, 6s0u:D, 6s0u:E, 6s0u:F, 6s0v:A, 6s0v:C, 6s0v:D, 6s0v:E, 6s0v:F, 6s0w:A, 6s0w:B, 6s0w:C, 6s0w:D, 6s0w:E, 6s0w:F
12 4p53:A 360 98 0.1107 0.0750 0.2755 1.6
13 2a1x:A 253 236 0.2090 0.2016 0.2161 2.1
14 6lpv:A 434 48 0.0779 0.0438 0.3958 4.4
15 5z16:B 739 84 0.0984 0.0325 0.2857 4.7 5z16:A
16 5yei:C 397 24 0.0410 0.0252 0.4167 5.6 5yei:D, 5yei:B, 5yei:A, 5yei:F, 5yei:E, 5yei:H, 5yei:G
17 5epa:A 258 153 0.1516 0.1434 0.2418 7.0 5epa:B, 5epa:C, 5epa:D, 5epa:E, 5epa:F
18 3aaw:C 392 24 0.0410 0.0255 0.4167 8.8 3aaw:A, 3aaw:B, 3aaw:D, 3ab2:A, 3ab2:B, 3ab2:C, 3ab2:D, 3ab2:E, 3ab2:F, 3ab2:G, 3ab2:H, 3ab2:I, 3ab2:J, 3ab2:K, 3ab2:L, 3ab2:M, 3ab2:N, 3ab2:O, 3ab2:P, 3ab4:B, 3ab4:D, 3ab4:F, 3ab4:H, 3ab4:J, 3ab4:K, 3ab4:L, 3ab4:M, 3ab4:N, 3ab4:P, 2dtj:A, 2dtj:B
19 3ab4:A 370 24 0.0410 0.0270 0.4167 9.5 3ab4:C, 3ab4:E, 3ab4:G, 3ab4:I, 3ab4:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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