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BioLiP
>protein
TLRYPVKPEEMDWSELYPEFFQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAFQNIACLRSN
AMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERV
PLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDP

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8eg0:A 230 209 1.0000 0.8783 0.9665 1.99e-147 3ckk:A, 8cth:A, 8cti:A, 8d59:A, 8d5b:A, 8d9l:A, 7ogj:A, 7ogj:B, 7pl1:A
2 2vdv:E 216 212 0.6139 0.5741 0.5849 4.01e-81 2vdv:F
3 3dxy:A 207 113 0.1337 0.1304 0.2389 0.005 3dxz:A
4 3vc1:D 288 118 0.1584 0.1111 0.2712 0.007 4f86:D, 4f86:G, 3vc1:A, 3vc1:B, 3vc1:C, 3vc1:E, 3vc1:F, 3vc1:G, 3vc1:H, 3vc1:I, 3vc1:J, 3vc1:K, 3vc1:L, 3vc2:A, 3vc2:B, 3vc2:C, 3vc2:D, 3vc2:E, 3vc2:F, 3vc2:G, 3vc2:H, 3vc2:I, 3vc2:J, 3vc2:K, 3vc2:L
5 6p3o:A 341 80 0.1040 0.0616 0.2625 0.012 6p3m:A, 6p3n:A
6 6rxt:US 451 168 0.2327 0.1042 0.2798 0.022 6rxu:US, 6rxv:US, 6rxy:US, 6rxz:US
7 5dpd:A 511 153 0.1832 0.0724 0.2418 0.13 5dnk:A, 5dnk:B, 5dpd:B
8 6bqc:A 348 42 0.0693 0.0402 0.3333 0.59
9 6jq0:A 516 55 0.0842 0.0329 0.3091 0.61
10 5kok:A 348 58 0.0693 0.0402 0.2414 0.66 5koc:A, 5koc:B, 5kok:B, 5kpc:A, 5kpc:B, 5kpg:A, 5kpg:B
11 4f86:A 275 118 0.1436 0.1055 0.2458 0.87 4f84:A, 4f86:B, 4f86:C, 4f86:E, 4f86:F, 4f86:H, 4f86:I, 4f86:J, 4f86:K, 4f86:L
12 7qos:A 352 47 0.0693 0.0398 0.2979 1.2 7qos:B
13 3slr:A 376 63 0.0990 0.0532 0.3175 1.2
14 6gkv:A 351 56 0.0644 0.0370 0.2321 2.6 6gkv:B, 6gky:A, 6gky:B, 6gkz:A, 6gkz:B, 6gkz:C, 6gkz:D
15 5fgi:N 213 45 0.0644 0.0610 0.2889 2.8 5ahj:N, 5ahj:b, 5bou:N, 5bou:b, 8bw1:N, 5bxl:N, 5bxn:N, 5bxn:b, 5cgf:N, 5cgg:N, 5cgh:N, 5cgi:N, 5cgi:b, 5cz4:N, 5cz5:N, 5cz6:N, 5cz7:N, 5cz7:b, 5cz8:N, 5cz8:b, 5cz9:N, 5cz9:b, 5cza:N, 5d0s:N, 5d0s:b, 5d0t:N, 5d0t:b, 5d0v:N, 5d0v:b, 5d0w:N, 5d0x:N, 5d0x:b, 5d0z:N, 5d0z:b, 3d29:N, 3d29:2, 5dki:N, 5dki:b, 5dkj:N, 5dkj:b, 6ef3:1, 4eu2:H, 4eu2:V, 2f16:N, 2f16:2, 2fak:N, 2fak:2, 5fg7:N, 5fg9:N, 5fgd:N, 5fgd:b, 5fge:N, 5fge:b, 5fgf:N, 5fgf:b, 5fgg:N, 5fgg:b, 5fgh:N, 5fgh:b, 5fhs:N, 5fhs:b, 1fnt:H, 1fnt:V, 9fsv:N, 9ft0:N, 1g0u:N, 1g0u:2, 4g4s:H, 1g65:N, 6g7f:N, 6g7f:b, 6g8m:N, 6g8m:b, 6g8n:N, 6g8n:b, 4gk7:N, 4gk7:b, 6gop:N, 6gop:b, 3gpt:N, 3gpt:2, 3gpw:N, 3gpw:2, 6h39:N, 4hnp:N, 4hnp:b, 4hrc:N, 4hrc:b, 4hrd:N, 4hrd:b, 6htc:N, 6htc:b, 6htr:N, 6hub:N, 6huc:N, 6huv:N, 6hv3:N, 6hv4:N, 6hv4:b, 6hva:N, 6hvr:N, 6hvs:N, 6hvt:N, 6hvv:N, 6hw0:N, 6hw3:N, 6hw4:N, 6hw5:N, 6hw6:N, 6hwa:N, 6hwc:N, 6hwd:N, 6hwd:b, 6hwe:N, 6hwe:b, 6hwf:N, 6hwf:b, 3hye:N, 3hye:2, 1jd2:N, 5jhr:N, 5jhs:N, 5l52:N, 5l52:b, 5l54:N, 5l55:N, 5l5a:N, 5l5b:N, 5l5d:N, 5l5d:b, 5l5e:N, 5l5e:b, 5l5f:N, 5l5f:b, 5l5h:N, 5l5i:N, 5l5j:N, 5l5o:N, 5l5p:N, 5l5p:b, 5l5q:N, 5l5s:N, 5l5t:N, 5l5u:N, 5l5v:N, 5l5v:b, 5l5x:N, 5l5x:b, 5l5y:N, 5l5y:b, 5l5z:N, 5l5z:b, 5l60:N, 5l60:b, 5l61:N, 5l61:b, 5l62:N, 5l62:b, 5l63:N, 5l63:b, 5l64:N, 5l65:N, 5l65:b, 5l66:N, 5l66:b, 5l67:N, 5l68:N, 5l69:N, 5l6a:N, 5l6b:N, 5l6b:b, 5l6c:N, 5lai:N, 5laj:N, 4lqi:N, 4lqi:b, 5ltt:N, 5m2b:N, 3mg0:N, 3mg0:2, 3mg4:N, 3mg6:N, 3mg7:N, 3mg8:N, 4nnn:N, 4nnn:b, 4nnw:N, 4nnw:b, 4no1:N, 4no6:N, 4no9:N, 7o2l:N, 7o2l:b, 3oeu:N, 3oev:N, 8oi1:N, 8olr:N, 8olr:b, 4qby:N, 4qlq:N, 4qls:N, 4qlt:N, 4qlu:N, 4qv6:N, 4qvl:N, 4qvl:b, 4qvm:N, 4qvm:b, 4qvn:N, 4qvn:b, 4qvp:N, 4qvp:b, 4qvq:N, 4qvq:b, 4qvv:N, 4qvv:b, 4qvw:N, 4qvw:b, 4qvy:N, 4qvy:b, 4qw0:N, 4qw0:b, 4qw1:N, 4qw1:b, 4qw3:N, 4qw3:b, 4qw4:N, 4qw4:b, 4qw5:N, 4qw5:b, 4qw6:N, 4qw6:b, 4qw7:N, 4qw7:b, 4qwf:N, 4qwf:b, 4qwg:N, 4qwg:b, 4qwi:N, 4qwi:b, 4qwj:N, 4qwj:b, 4qwk:N, 4qwk:b, 4qwl:N, 4qwl:b, 4qwr:N, 4qwr:b, 4qws:N, 4qws:b, 4qwu:N, 4qwu:b, 4qwx:N, 4qwx:b, 4qxj:N, 4qxj:b, 4qz0:N, 4qz0:b, 4qz1:N, 4qz1:b, 4qz2:N, 4qz2:b, 4qz3:N, 4qz3:b, 4qz4:N, 4qz4:b, 4qz5:N, 4qz5:b, 4qz6:N, 4qz6:b, 4qz7:N, 4qz7:b, 4qzw:N, 4qzw:b, 4qzx:N, 4qzx:b, 4qzz:N, 4qzz:b, 4r00:N, 4r00:b, 4r02:N, 4r17:N, 4r18:N, 8rhj:N, 8rhj:b, 8rhk:N, 8rhk:b, 8rhl:N, 4rur:N, 1ryp:H, 1ryp:V, 3sdi:N, 3sdi:2, 3sdk:N, 3un4:N, 3un4:b, 4y69:N, 4y69:b, 4y6a:N, 4y6a:b, 4y6v:N, 4y6v:b, 4y6z:N, 4y6z:b, 4y70:N, 4y74:N, 4y74:b, 4y75:N, 4y75:b, 4y77:N, 4y77:b, 4y78:N, 4y78:b, 4y7w:N, 4y7w:b, 4y7x:N, 4y7y:N, 4y80:N, 4y80:b, 4y81:N, 4y81:b, 4y82:N, 4y82:b, 4y84:N, 4y84:b, 4y8g:N, 4y8g:b, 4y8h:N, 4y8h:b, 4y8i:N, 4y8i:b, 4y8j:N, 4y8j:b, 4y8k:N, 4y8k:b, 4y8l:N, 4y8l:b, 4y8m:N, 4y8n:N, 4y8n:b, 4y8o:N, 4y8o:b, 4y8p:N, 4y8p:b, 4y8q:N, 4y8q:b, 4y8r:N, 4y8s:N, 4y8s:b, 4y8t:N, 4y8t:b, 4y8u:N, 4y8u:b, 4y9z:N, 4y9z:b, 4ya0:N, 4ya0:b, 4ya1:N, 4ya2:N, 4ya2:b, 4ya3:N, 4ya3:b, 4ya4:N, 4ya5:N, 4ya5:b, 4ya7:b, 4ya7:N, 4ya9:N, 4ya9:b, 4z1l:N, 4z1l:b, 2zcy:N, 2zcy:1, 6zou:N, 6zp6:N, 6zp8:N
16 5nj5:A 480 62 0.0743 0.0312 0.2419 3.0 5nj5:C, 5nj9:A, 5nj9:C, 5nja:A, 5nja:C, 5njb:A, 5njb:C, 5njc:A, 5njc:C, 5njf:A, 5njf:C
17 5wgb:A 291 68 0.1040 0.0722 0.3088 3.1
18 7slp:A 239 63 0.0743 0.0628 0.2381 4.5 7slq:A
19 5xgd:A 548 63 0.0842 0.0310 0.2698 4.8 8pps:A, 8pps:B, 5xge:A
20 3gu3:A 276 23 0.0594 0.0435 0.5217 5.5 3gu3:B
21 3sxj:A 245 67 0.1040 0.0857 0.3134 5.5 3sxj:B, 3t0i:A, 3t0i:B
22 4kif:B 339 75 0.0842 0.0501 0.2267 6.1 4kib:A, 4kib:B, 4kic:A, 4kic:B, 4kif:A, 4kig:A, 4kig:B, 4m6x:A, 4m6x:B, 4m6y:A, 4m6y:B, 4m71:A, 4m71:B, 4m72:A, 4m72:B, 4m73:A, 4m73:B, 4m74:A, 4m74:B
23 7odx:A 350 29 0.0545 0.0314 0.3793 6.8
24 3t64:A 153 33 0.0446 0.0588 0.2727 8.2 3t60:A, 3t60:B, 3t60:C, 3t64:B, 3t64:C, 3t6y:A, 3t6y:B, 3t6y:C, 3t70:A, 3t70:B, 3t70:C, 1vyq:A, 1vyq:B, 1vyq:C, 2y8c:A
25 6hp2:A 297 39 0.0545 0.0370 0.2821 8.6
26 6dcb:A 225 52 0.0693 0.0622 0.2692 9.0 6dcc:A, 5una:C, 5una:A, 5una:B, 5una:D, 5una:E, 5una:F
27 5dpl:A 520 27 0.0495 0.0192 0.3704 9.9 5doo:A, 5dpl:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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