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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TLQRVTVFTGSALGSSSLYTQAAQTLAKTAVDRGIDLVYGGGKVGLMGIVADAFLESGGEAFGVITESLMKGLGHEKLTE
LEIVPDMHIRKRRMAELGDGFIAMPGGAGTLEELFEVWTWQQLGIHQKPVALYDVDGFWQPLLEMLEQMTQRGFIKRDFF
ECLIVESDPHALLKAMQTWTP

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zbl:D 181 181 1.0000 1.0000 1.0000 2.99e-132 5zbl:C
2 5zbk:A 182 182 0.5249 0.5220 0.5220 3.47e-62
3 5aju:A 217 200 0.3867 0.3226 0.3500 2.14e-34
4 7w2i:A 183 172 0.3425 0.3388 0.3605 1.23e-23 7w2i:B, 7w2i:C, 7w2i:D
5 3sbx:A 177 146 0.2983 0.3051 0.3699 5.62e-21 3sbx:B, 3sbx:C, 3sbx:D, 3sbx:E, 3sbx:F, 3sbx:G, 3sbx:H
6 6gfm:A 440 52 0.1105 0.0455 0.3846 0.052
7 5w1x:A 422 65 0.0939 0.0403 0.2615 2.9 5w1x:B, 5w1x:E, 5w1x:F, 5w1x:G, 5w1x:J, 5w1x:L, 5w1x:N
8 6s50:A 248 43 0.0718 0.0524 0.3023 4.8 7alx:AAA, 7alx:BBB, 6anx:A, 8aqd:A, 8aqj:A, 8aqo:A, 8aqo:D, 8aqo:B, 8aqo:C, 8aqx:A, 8aqx:B, 8aqx:C, 8aqx:D, 8aqy:A, 8aqy:C, 8aqy:B, 8aqy:D, 6auc:A, 6aue:A, 6auh:A, 6aul:A, 6auo:A, 6avk:A, 6avk:B, 5b5f:A, 5b5f:B, 5b5f:C, 5b5f:D, 5b5g:A, 5b5g:B, 5b5g:C, 5b5g:D, 7b74:AAA, 7b74:BBB, 7b74:CCC, 7b74:DDD, 4bx7:B, 8by0:A, 8by1:A, 4cpe:A, 4cpe:B, 4cpf:B, 4cph:B, 4cph:C, 4cpi:A, 4cpi:B, 4cpi:C, 4cpi:D, 8crn:A, 8crn:C, 8crn:B, 8crn:D, 8crp:A, 8crp:B, 8crp:D, 8crp:C, 5cse:A, 5cse:B, 1df8:A, 1df8:B, 4dne:A, 4dne:B, 7efc:A, 7efd:A, 4ekv:A, 6ess:A, 6esu:A, 2f01:A, 2f01:B, 6fh8:A, 6fry:A, 2g5l:A, 2g5l:B, 4gd9:A, 4gd9:C, 4gd9:D, 4gda:A, 4gda:B, 2gh7:A, 2gh7:B, 6gh7:A, 6gh7:B, 6gh7:C, 6gh7:D, 4gjs:A, 4gjs:B, 4gjv:A, 6gmi:A, 8gog:A, 8gog:B, 1hqq:A, 1hqq:B, 1hqq:C, 1hqq:D, 1hxl:A, 1hxl:B, 1hxz:A, 1hxz:B, 1hy2:A, 1hy2:B, 1hy2:C, 1hy2:D, 1i9h:A, 1i9h:B, 4irw:A, 5ira:A, 2izf:B, 2izf:D, 2izg:B, 2izg:D, 2izh:B, 2izh:D, 2izi:A, 2izj:A, 2izk:A, 2izl:B, 2izl:D, 6j6j:A, 6j6j:B, 6j6j:C, 6j6j:D, 5jd2:A, 5jd2:B, 5jd2:C, 5jd2:D, 4jo6:A, 4jo6:C, 4jo6:B, 4jo6:D, 5k67:A, 5k68:A, 7kby:A, 7kbz:A, 7kbz:B, 7kbz:C, 7kbz:D, 1kl3:A, 1kl3:D, 1kl3:B, 1kl3:C, 1kl5:A, 1kl5:B, 1kl5:C, 1kl5:D, 5l3y:A, 1lcv:A, 1lcv:B, 1lcw:A, 1lcw:B, 1lcz:A, 1lcz:B, 1luq:A, 1luq:B, 6m9b:A, 6m9b:B, 6m9b:C, 6m9b:D, 1mep:A, 1mep:B, 1mep:C, 1mep:D, 3mg5:A, 3mg5:B, 3mg5:C, 3mg5:D, 1mk5:A, 1mk5:B, 1n43:A, 1n43:B, 1n43:C, 1n43:D, 5n7x:B, 5n7x:M, 5n7x:A, 5n7x:K, 5n7x:F, 5n7x:H, 5n7x:E, 5n7x:O, 5n89:B, 5n89:D, 5n89:A, 5n89:F, 5n89:H, 5n89:M, 5n89:K, 5n89:O, 5n8b:A, 5n8b:B, 5n8b:D, 5n8b:G, 5n8e:B, 5n8e:D, 5n8e:A, 5n8e:C, 5n8j:D, 5n8j:A, 5n8j:B, 5n8t:A, 5n8w:B, 5n8w:A, 1n9m:A, 1n9m:B, 1n9m:C, 1n9m:D, 5n99:A, 5n99:B, 5n99:D, 5n99:G, 5n99:I, 5n99:K, 5n99:M, 5n99:O, 5n99:Q, 5n99:S, 5n99:U, 5n99:Y, 1nc9:A, 1ndj:A, 1ndj:B, 1ndj:C, 1ndj:D, 7nlv:AAA, 7nlv:BBB, 7nlv:CCC, 7nlv:DDD, 1nqm:A, 1nqm:B, 1nqm:C, 1nqm:D, 8ojw:A, 8ojx:A, 4oka:A, 8p5y:A, 8p5y:B, 8p5y:C, 8p5y:D, 8p5z:A, 8p5z:B, 8p5z:C, 8p5z:D, 3pk2:A, 6qbb:A, 6qbb:B, 2qcb:A, 8qex:A, 8qex:B, 8qq3:A, 8qq3:C, 8qq3:B, 8qq3:D, 6qsy:A, 6qw4:A, 3rdm:A, 3rdq:A, 1rst:B, 1rsu:B, 2rtd:B, 2rtd:D, 2rte:B, 2rte:D, 2rtf:B, 2rtf:D, 2rtg:B, 2rtg:D, 2rth:B, 2rth:D, 2rti:B, 2rti:D, 2rtj:A, 2rtk:A, 2rtl:A, 2rtm:A, 2rtn:B, 2rtn:D, 2rto:B, 2rto:D, 2rtp:B, 2rtp:D, 2rtq:B, 2rtq:D, 2rtr:B, 2rtr:D, 1rxh:A, 1rxh:B, 1rxj:A, 1rxj:B, 1rxj:C, 1rxj:D, 1rxk:A, 1rxk:B, 3ry2:A, 3ry2:B, 6s4q:A, 6s4q:B, 6s50:B, 1sld:B, 1sle:B, 1sle:D, 1slf:B, 1slf:D, 1slg:B, 1slg:D, 6sok:A, 6sok:B, 6sok:C, 6sok:D, 6sos:B, 6sos:C, 6sos:A, 6sos:D, 1sre:A, 1sre:B, 1srf:A, 1srf:B, 1srg:B, 1srg:A, 1srh:B, 1srh:A, 1sri:B, 1sri:A, 1srj:A, 1srj:B, 1stp:A, 1str:B, 1str:D, 1sts:B, 1sts:D, 1swd:A, 1swd:D, 1swe:A, 1swe:B, 1swe:C, 1swe:D, 1swg:A, 1swg:B, 1swg:D, 1swk:A, 1swk:B, 1swk:C, 1swk:D, 1swn:A, 1swn:C, 1swn:D, 1swp:A, 1swp:B, 1swp:C, 1swp:D, 1swr:A, 1swr:B, 1swr:C, 1swr:D, 1swt:A, 1swt:B, 3t6f:A, 3t6f:B, 6tip:A, 8ty0:B, 8ty0:C, 8ty0:A, 8ty0:D, 6uc3:A, 6uc3:B, 6udc:A, 6udc:B, 6udc:C, 6udc:D, 6ui0:A, 6uiu:A, 6uiy:A, 6uiz:A, 6us6:A, 5vcq:A, 5vcq:B, 5vcq:C, 5vcq:D, 6vjk:A, 6vjk:B, 6vjk:C, 6vjk:D, 6vjk:E, 6vjk:F, 6vjk:G, 6vjk:H, 6vjk:I, 6vjk:J, 6vjk:K, 6vjk:L, 6vjl:A, 5vkx:A, 5vl5:A, 5vl8:A, 6vo9:A, 6vob:A, 6voz:A, 6vp1:A, 6vp1:B, 6vp1:C, 6vp1:D, 6vp2:A, 6vp2:B, 6vp2:C, 6vp2:D, 6vp3:A, 6vp3:B, 6vp3:C, 6vp3:D, 1vwa:B, 1vwa:D, 1vwb:B, 1vwc:B, 1vwd:B, 1vwe:B, 1vwf:B, 1vwg:B, 1vwh:B, 1vwi:B, 1vwi:D, 1vwj:B, 1vwj:D, 1vwk:B, 1vwk:D, 1vwl:B, 1vwl:D, 1vwm:B, 1vwn:B, 1vwo:B, 1vwp:B, 1vwq:B, 1vwr:B, 5wba:A, 5wbb:A, 5wbc:A, 5wbd:A, 2wpu:A, 3wyp:A, 3wyp:B, 3wyp:D, 3wyp:C, 3wyq:A, 3wyq:B, 3wzp:A, 3wzp:C, 6y25:AAA, 6y2m:AAA, 6y2t:AAA, 2y3f:A, 6y33:AAA, 6y34:AAA, 6y3q:AAA, 4y59:A, 4y59:B, 4y59:C, 4y59:D, 4y5d:A, 4y5d:B, 4y5d:D, 4yvb:A, 4yvb:B, 4yvb:C, 4yvb:D, 7zof:A, 7zof:C, 7zof:B, 7zof:D, 7zx9:A, 7zxz:A, 7zxz:B
9 6tyw:A 218 49 0.0829 0.0688 0.3061 5.5 6tyt:A, 6tyu:A, 6tyv:A, 6tyx:A, 6tyx:B, 6tyz:A
10 8otv:A 212 45 0.0829 0.0708 0.3333 6.4 8otv:B
11 7u0t:A 190 86 0.1160 0.1105 0.2442 7.2
12 6ddg:a 100 60 0.1105 0.2000 0.3333 7.8
13 8bhv:b 650 83 0.1381 0.0385 0.3012 9.5 8bhv:j, 8bot:C, 7zyg:B
14 8bh3:C 668 83 0.1381 0.0374 0.3012 9.6 8bh3:L, 8bhy:C, 8bhy:L, 8bot:H, 8bot:U, 7k0y:C, 7nfc:H, 7sgl:C, 7z87:C, 7z88:C
15 3kih:B 95 50 0.0829 0.1579 0.3000 9.8 3kih:A, 3kih:C, 3kih:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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