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BioLiP
>protein
TLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIGT
L

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1cxy:A 81 81 1.0000 1.0000 1.0000 8.57e-58
2 1awp:A 86 77 0.3457 0.3256 0.3636 1.46e-14 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
3 3ner:B 91 81 0.3457 0.3077 0.3457 2.83e-14 3ner:A
4 3ozz:B 82 77 0.3457 0.3415 0.3636 8.57e-14
5 2ibj:A 86 80 0.3210 0.3023 0.3250 1.59e-13
6 2i89:A 90 77 0.3333 0.3000 0.3506 2.60e-13 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
7 4b8n:B 90 53 0.2346 0.2111 0.3585 2.67e-12 4b8n:A, 4b8n:C, 4b8n:D
8 1aw3:A 94 80 0.3333 0.2872 0.3375 5.57e-12 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
9 1hko:A 104 80 0.3210 0.2500 0.3250 6.63e-12 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
10 1kbi:A 504 49 0.2840 0.0456 0.4694 9.44e-12 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
11 2i96:A 108 77 0.3086 0.2315 0.3247 5.30e-11 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
12 3lf5:A 87 52 0.2346 0.2184 0.3654 1.58e-09 3lf5:B
13 8tgb:A 108 50 0.2222 0.1667 0.3600 2.17e-09 8tgb:B
14 1x3x:A 82 77 0.2716 0.2683 0.2857 3.08e-08 1x3x:B
15 1sox:A 463 83 0.3580 0.0626 0.3494 9.79e-07 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
16 7bwh:A 88 83 0.2716 0.2500 0.2651 3.91e-06
17 1mj4:A 79 75 0.2716 0.2785 0.2933 6.71e-04
18 6vz6:A 77 32 0.1605 0.1688 0.4062 0.11
19 4x8y:A 112 38 0.1728 0.1250 0.3684 0.45 4x8y:B
20 6nzx:A 76 83 0.2963 0.3158 0.2892 1.4
21 6kzb:C 649 76 0.2222 0.0277 0.2368 1.7
22 7oi6:x 374 18 0.1111 0.0241 0.5000 3.1
23 5x5h:A 385 85 0.2346 0.0494 0.2235 4.5
24 5kjq:A 180 44 0.1728 0.0778 0.3182 8.8 3x2g:A, 3x2h:A, 3x2i:A, 3x2k:A, 3x2l:A, 3x2m:A, 3x2p:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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