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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TLPDMDTLRERLLAGDRAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG
HKVAVLAVDPSSRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVQSETAVADLTDFFLVLMLP
GELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK
LTATGEIAGKRREQDVKWMWALVHERLHQRLVGSAEVRQATAEAERAVAGGEHSPAAGADAIATLIGL

The query sequence (length=308) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jyb:A 323 323 0.9903 0.9443 0.9443 0.0 8dpb:A, 8dpb:B, 4jyb:B, 4jyc:D, 4lc1:A, 4lc1:B, 2qm7:A, 2qm7:B
2 3tk1:B 319 299 0.5195 0.5016 0.5351 1.56e-97
3 3nxs:A 306 294 0.5097 0.5131 0.5340 1.51e-94
4 3p32:A 306 310 0.5260 0.5294 0.5226 2.92e-92 4gt1:A, 3md0:A
5 3tk1:A 293 293 0.4805 0.5051 0.5051 5.92e-82
6 8gju:F 332 326 0.4545 0.4217 0.4294 6.78e-79 8gju:D, 8gju:A, 8gju:B
7 2www:D 314 311 0.4123 0.4045 0.4084 2.41e-69 2www:A, 2www:B, 2www:C
8 8ssl:A 1072 194 0.1981 0.0569 0.3144 3.81e-09 5cjt:A, 5cjt:B, 5cju:A, 5cju:B, 5cjv:A, 5cjv:B, 5cjw:A, 5cjw:B, 8ssl:B, 8ssl:C, 4xc6:A, 4xc6:B, 4xc7:A, 4xc8:A, 4xc8:B
9 6lsr:1 247 45 0.0617 0.0769 0.4222 1.62e-04
10 2gks:B 529 49 0.0584 0.0340 0.3673 0.037 2gks:A
11 1cp2:A 269 44 0.0617 0.0706 0.4318 0.041 1cp2:B
12 8fkt:NB 387 181 0.1558 0.1240 0.2652 0.041 8fkp:NB, 8fku:NB, 8fkv:NB, 8fkw:NB, 8fkx:NB, 8fky:NB, 8fkz:NB, 8fl0:NB, 8ink:u, 8ipd:u, 8ipx:u, 8ipy:u
13 2afh:E 289 64 0.0649 0.0692 0.3125 0.045 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
14 7obq:y 454 130 0.1234 0.0837 0.2923 0.13 6frk:y, 2go5:1, 5l3q:B, 5l3q:D, 6y32:B, 6y32:D, 6y32:F, 6y32:H
15 5d00:A 361 77 0.0682 0.0582 0.2727 0.16 5d00:B, 5d01:A, 5d01:B
16 7oi6:y 331 204 0.1526 0.1420 0.2304 0.20 8pk0:t
17 8i9w:CL 397 26 0.0519 0.0403 0.6154 0.22 8i9t:CL, 8i9v:CL, 8i9x:CL, 8i9y:CL, 8i9z:CL, 8ia0:CL, 8pv1:CL, 8pv2:CL, 8pv3:CL, 8pv4:CL, 8pv5:CL, 8pv6:CL, 8pv7:CL, 8pv8:CL, 8pvk:CL, 8pvl:CL
18 6nzj:A 273 46 0.0455 0.0513 0.3043 0.33 6nzj:B
19 6g0z:A 290 24 0.0455 0.0483 0.5833 0.41 6g0z:B, 6g12:A, 6g12:B, 6g14:B, 6g14:A, 6g15:A, 6g15:B
20 7c3k:B 389 108 0.0909 0.0720 0.2593 0.52 7c3k:A, 8jqz:A, 8jqz:B
21 5ean:A 1051 53 0.0649 0.0190 0.3774 0.53 5eaw:A, 5eaw:B, 5eax:A, 5eax:B
22 8pv1:Cd 462 40 0.0552 0.0368 0.4250 0.69 8pv2:Cd, 8pv3:Cd, 8pv4:Cd, 8pv5:Cd, 8pv6:Cd, 8pv7:Cd, 8pv8:Cd, 8pvk:Cd, 8pvl:Cd
23 3add:A 251 35 0.0487 0.0598 0.4286 0.70 3a4l:A, 3a4l:B, 3a4m:A, 3a4m:B, 3adb:A, 3adb:B, 3adc:A, 3adc:B, 3add:B, 3am1:A
24 8jxu:A 1410 43 0.0487 0.0106 0.3488 0.76 8jxq:A
25 7y9i:A 362 60 0.0552 0.0470 0.2833 0.79
26 1puj:A 261 33 0.0552 0.0651 0.5152 0.80 6ppk:W
27 2ohf:A 327 23 0.0357 0.0336 0.4783 0.81
28 5ee3:B 364 60 0.0519 0.0440 0.2667 1.0 5ee3:A, 5ee9:A
29 6n8n:W 377 20 0.0357 0.0292 0.5500 1.1 6n8o:W
30 6yxx:EM 308 58 0.0617 0.0617 0.3276 1.3
31 1mky:A 407 26 0.0422 0.0319 0.5000 1.3
32 6qtz:o 325 20 0.0357 0.0338 0.5500 1.4 6qik:o, 6ri5:o, 6rzz:o, 6s05:o
33 3dm5:A 416 91 0.0747 0.0553 0.2527 1.5 3dm5:B
34 5t62:W 306 20 0.0357 0.0359 0.5500 1.6
35 8rq4:A 1402 39 0.0422 0.0093 0.3333 1.9
36 3qsy:A 415 72 0.0779 0.0578 0.3333 2.0 2aho:A, 3cw2:B, 6i5m:A, 5jb3:7, 5jbh:7, 4m0l:A, 4m0l:B, 4m0l:C, 4m0l:D, 4m0l:E, 4m0l:F, 4m2l:A, 4m4s:A, 4nbs:A, 3pen:A, 2pmd:A, 2pmd:B, 4qfm:A, 4qhy:A, 2qmu:A, 2qn6:A, 6r8s:A, 6r8t:A, 4rcy:A, 4rcz:A, 4rd0:A, 4rd1:A, 4rd2:A, 4rd3:A, 4rd4:A, 4rd6:A, 4rjl:A, 3sjz:A, 6sw9:7, 6swc:7, 3v11:A
37 5zme:A 638 41 0.0487 0.0235 0.3659 2.2 5zmf:A
38 5dn8:A 405 38 0.0552 0.0420 0.4474 2.2
39 6cy5:B 318 44 0.0519 0.0503 0.3636 2.3 6cy5:A
40 5nrn:B 211 34 0.0487 0.0711 0.4412 2.3 1g3u:A, 1gsi:A, 1gtv:A, 1gtv:B, 1mrn:A, 1mrs:A, 1n5i:A, 1n5j:A, 1n5k:A, 1n5k:B, 1n5l:A, 1n5l:B, 5nrq:A, 1w2g:A, 1w2g:B, 1w2h:A, 1w2h:B, 6yt1:A, 6yt1:B
41 2ynm:B 268 39 0.0455 0.0522 0.3590 2.3 2ynm:A
42 1vco:A 531 38 0.0519 0.0301 0.4211 2.5 1vcn:A
43 3gp8:A 551 53 0.0682 0.0381 0.3962 3.1 3gpl:A, 3gpl:B
44 5nq5:A 191 34 0.0487 0.0785 0.4412 3.2 5nr7:A, 5nr7:B, 5nrn:A, 5nrq:B, 4unn:A, 4unn:B, 4unp:A, 4unq:A, 4unq:B, 4unr:A, 4unr:B, 4uns:A, 4uns:B
45 2dby:A 355 18 0.0390 0.0338 0.6667 3.7
46 3p2y:A 345 80 0.0714 0.0638 0.2750 4.0
47 1nks:C 194 29 0.0422 0.0670 0.4483 4.6 1nks:D, 1nks:F
48 8kie:y 363 142 0.1266 0.1074 0.2746 4.7
49 6f89:A 344 108 0.1104 0.0988 0.3148 5.4 6f87:A, 6f87:B, 6f87:C, 6f87:D, 6f89:B, 6f8y:A, 6f8y:B, 6f8y:C, 6f8y:D
50 8fl2:NC 511 24 0.0390 0.0235 0.5000 5.6 8fkz:NC, 8fl0:NC, 8fl3:NC, 8fl4:NC, 8idt:A, 8idy:A, 8ie3:A, 8ine:A, 8inf:A, 8ink:w, 8ipd:w, 8ipx:w, 8ipy:w, 8ir1:w, 8ir3:w
51 5cb8:B 176 39 0.0455 0.0795 0.3590 5.6 5cb6:A, 5cb6:B, 5cb6:C, 5cb6:D, 5cb6:E, 5cb6:F, 5cb8:A
52 5if9:A 251 30 0.0390 0.0478 0.4000 5.9 5if9:B, 5ihp:A, 5ihp:B
53 8osg:B 323 52 0.0682 0.0650 0.4038 6.0 8osf:A, 8osf:B, 8osf:C, 8osf:D, 8osf:E, 8osg:C, 8osg:D, 8osg:E
54 7yq0:A 173 35 0.0455 0.0809 0.4000 6.3 7yq0:B, 7yq1:A, 7yq1:B, 7yq1:C, 7yq1:D, 7yq1:E, 7yq1:F
55 7rr5:R 355 53 0.0649 0.0563 0.3774 8.2
56 8osg:F 258 47 0.0649 0.0775 0.4255 8.7
57 8bx8:C 3947 41 0.0519 0.0041 0.3902 8.7 7k58:C, 7k5b:C, 7kek:C
58 1qzw:A 432 35 0.0422 0.0301 0.3714 9.2 3kl4:A, 5l3s:A, 5l3s:C, 5l3s:E, 5l3s:G, 5l3v:A, 5l3v:B, 1qzw:C, 1qzw:E, 1qzw:G, 3zn8:M
59 7tfh:B 320 35 0.0390 0.0375 0.3429 9.3 8dqw:B, 8dqx:B, 8dqz:B, 8dr0:B, 8dr1:B, 8dr3:B, 8dr4:B, 8dr5:B, 8dr6:B, 8dr7:B, 8fs3:B, 8fs4:B, 8fs5:B, 8fs6:B, 8fs7:B, 8fs8:B, 7sgz:B, 7sh2:B, 7st9:B, 7stb:B, 7ste:B, 1sxj:B, 7tfi:B, 7tfj:B, 7tfk:B, 7tfl:B, 7thj:B, 7thv:B, 8thb:B, 8thc:B, 8thd:B, 7ti8:B, 7tib:B, 7tic:B, 7tid:B, 7tku:B, 8tw7:4, 8tw8:4, 8twa:4, 8twb:4, 7u19:B, 7u1a:B, 7u1p:B
60 8ui7:B 319 48 0.0519 0.0502 0.3333 9.4 8ui8:B, 8ui9:B, 8uii:B, 8umt:B, 8umu:B, 8umv:B, 8umw:B, 8umy:B, 8un0:B, 8unj:B, 6vvo:B, 7z6h:F
61 3cnl:A 233 22 0.0422 0.0558 0.5909 9.4 3cnn:A, 3cno:A
62 4j1t:E 373 61 0.0552 0.0456 0.2787 9.7 4j16:A, 4j16:B, 4j1t:B, 4o9u:E, 4o9u:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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