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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TLPDILTFNLDIVIIGIAPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPGSKD
LSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRA
QDKVHYYIKLKDLRDQLKGIE

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1wyw:A 216 181 0.9945 0.8333 0.9945 9.33e-137 5cys:A, 5ff8:A, 4fnc:A, 5hf7:A, 4jgc:A, 5jxy:A, 2rba:A, 2rba:B, 5t2w:A, 6u15:A, 6u16:A, 6u17:A, 3ufj:B, 3ufj:A, 3uo7:A, 3uo7:B, 3uob:A, 3uob:B, 4xeg:A, 4z3a:A, 4z47:A, 4z7b:A, 4z7z:A
2 1mwi:A 165 152 0.2707 0.2970 0.3224 2.44e-20 1mtl:A, 1mtl:B, 1mwj:A
3 3mhh:E 92 50 0.0939 0.1848 0.3400 0.033 6aqr:E, 4fip:D, 4fip:H, 4fjc:D, 4fk5:E, 3m99:D, 3mhs:E, 6t9l:N, 4wa6:E, 4zux:Y, 4zux:d, 4zux:i, 4zux:n
4 5ifp:A 968 62 0.1160 0.0217 0.3387 4.1 5ift:A, 5ihr:A, 5juv:A, 5mgc:A, 5mgd:A
5 8atu:A 2837 52 0.0829 0.0053 0.2885 4.2 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B
6 8auw:A 2900 52 0.0829 0.0052 0.2885 4.4
7 7x4y:E 459 44 0.0939 0.0370 0.3864 5.0 7x4l:A, 7x4l:F, 7x4l:B, 7x4l:E, 7x4l:C, 7x4l:D, 7x4y:A, 7x4y:C, 7x4y:B, 7x4y:D, 7x4y:F, 7x51:A, 7x51:B, 7x51:C, 7x51:D, 7x51:F, 7x51:E, 7x52:A, 7x52:C, 7x52:B, 7x52:E, 7x52:D, 7x52:F
8 5m1s:D 229 44 0.0718 0.0568 0.2955 5.1 2gui:A, 2ido:A, 2ido:C, 1j53:A, 1j54:A, 2xy8:A
9 5wtz:A 420 93 0.1492 0.0643 0.2903 5.2 5h04:A, 5wu0:A
10 1b1x:A 689 21 0.0497 0.0131 0.4286 8.8 1b7z:A, 3cr9:A, 1f9b:A, 1qjm:A
11 5kis:A 1446 95 0.1326 0.0166 0.2526 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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