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BioLiP
>protein
TLHKERRIGRLSVLLLLNEAQVEELERDGWKVCLGKVGSMDAHKVIAAIETASKKSGVIQSEGYRESHALYHATMEALHG
VTRGEMLLGSLLRTVGLRFAVLRGNPYESEAEGDWIAVSLYGTIGAPIKGLEHETFGVGINHI

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3boy:A 147 147 1.0000 0.9728 0.9728 2.04e-99 3boy:B, 3boy:C, 4h4l:A, 4h4l:B, 4h4l:C, 4h4l:D, 4h4l:E, 4h4l:F, 4h4l:G, 4h4l:H, 4h4l:I, 4h4l:J, 4h4l:K, 4h4l:L, 1vea:A, 1vea:B, 1wmq:A, 1wmq:B, 1wpu:A, 1wpu:B, 1wpv:A, 1wpv:C, 1wpv:B, 1wrn:A, 1wrn:C, 1wrn:B, 1wro:A, 1wro:C, 1wro:B, 1wrq:A, 1wrq:B
2 4ok9:A 146 145 0.5874 0.5753 0.5793 1.05e-56 4ok9:B, 4okq:A, 4okq:B
3 6tv0:A 155 50 0.1259 0.1161 0.3600 0.19 6tv0:J, 6tv0:G, 6tv0:I, 6tv0:B, 6tv0:E, 6tv0:C, 6tv0:H, 6tv0:D, 6tv0:F, 4y42:B, 4y42:H, 4y42:I, 4y42:J
4 1ox4:B 538 38 0.1049 0.0279 0.3947 1.1 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B
5 4pfq:C 184 56 0.1329 0.1033 0.3393 4.7 4pfq:A, 4pfq:B, 4pfq:D, 4pfq:E, 4pfq:F, 4pfq:G, 4pfq:H
6 2zo4:A 301 59 0.1329 0.0631 0.3220 5.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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