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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TLHAKLGGAAAVAATVDVFYKKLMNDPDLEPFFRGVDMVTLIAKQNRFLAYAFGATTHYHGKDIVMGHAHLIINRGLNLT
HFDKVAGHFVDSLKEMGVGQELIDEAAGVLIGVRPLFDPERYKGK

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6bme:A 127 125 1.0000 0.9843 1.0000 2.81e-89 6bme:B
2 4xdi:A 127 116 0.4160 0.4094 0.4483 1.08e-31 6cii:A, 4xdi:B
3 2hz1:A 123 109 0.4080 0.4146 0.4679 4.69e-26 2hz2:A, 2hz3:A, 1mwb:A, 1rtx:A, 1s69:A, 1s6a:A
4 1dly:A 121 114 0.3840 0.3967 0.4211 1.65e-23 1uvx:A
5 2ksc:A 123 114 0.3600 0.3659 0.3947 5.80e-23 4l2m:A, 4l2m:B, 4max:A, 4max:B, 4max:C
6 3aq5:A 117 116 0.3440 0.3675 0.3707 3.00e-19 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
7 1s56:B 135 110 0.3200 0.2963 0.3636 1.58e-16 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
8 1dlw:A 116 114 0.2960 0.3190 0.3246 4.26e-13 1uvy:A
9 6td7:A 126 106 0.2720 0.2698 0.3208 5.10e-13
10 2bkm:A 128 59 0.1680 0.1641 0.3559 4.36e-05 2bkm:B
11 5d1v:A 121 103 0.2240 0.2314 0.2718 7.98e-04 5d1v:B
12 5v3u:A 131 54 0.1440 0.1374 0.3333 0.002 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
13 6bap:A 505 44 0.1440 0.0356 0.4091 0.026 6baf:A, 6bak:A, 6bao:A, 6bao:B, 6bap:B, 6bap:C, 6bay:A, 6bay:B, 6bay:C, 4rq9:A
14 8tls:A 116 85 0.1520 0.1638 0.2235 0.033 8tls:B, 7tt9:A, 7tt9:B, 7tt9:C, 7tt9:D, 8ugz:A, 8ugz:B, 8ugz:C, 8ugz:D, 8uzu:A, 8uzu:B, 8uzu:C, 8uzu:D, 8vij:A, 8vij:B, 8vij:C, 8vij:D, 8vsh:A, 8vsh:B, 8vsh:C, 8vsh:D, 8w3a:A, 8w3a:B, 8w3a:C, 8w3a:D
15 1ux8:A 118 52 0.1280 0.1356 0.3077 0.050
16 9ay7:B 322 32 0.1040 0.0404 0.4062 0.72 4an2:A, 4an3:A, 4an9:A, 4anb:A, 4ark:A, 9axa:B, 9axa:D, 9axc:B, 9axc:D, 9axh:A, 9axh:B, 9axm:A, 9axm:C, 9axx:A, 9axx:C, 9axy:B, 9aya:B, 7b3m:A, 7b3m:B, 7b7r:B, 7b94:B, 7b9l:B, 5bx0:A, 8dgs:B, 8dgt:B, 3dv3:A, 3dy7:A, 3e8n:A, 3eqb:A, 3eqc:A, 3eqd:A, 3eqf:A, 3eqg:A, 3eqh:A, 3eqi:A, 7f2x:A, 5hze:A, 7juq:C, 7jur:C, 7jus:C, 7jut:C, 7juu:C, 7juv:C, 7juw:C, 7jux:C, 7juy:C, 7juz:C, 7jv0:C, 7jv1:C, 4lmn:A, 7m0t:B, 7m0u:B, 7m0v:B, 7m0w:B, 7m0x:B, 7m0y:B, 7m0z:B, 3mbl:A, 7mfd:B, 4mne:A, 4mne:D, 4mne:E, 4mne:H, 6nyb:B, 3orn:A, 3os3:A, 2p55:A, 3pp1:A, 6pp9:B, 7pqv:A, 6q0j:C, 6q0j:D, 6q0t:C, 1s9j:A, 3sls:B, 6u2g:A, 4u7z:A, 4u80:A, 4u81:A, 7umb:C, 3v01:A, 3v04:A, 6v2w:B, 3vvh:A, 3vvh:B, 3vvh:C, 3w8q:A, 3wig:A, 7xlp:A, 7xnc:A, 2y4i:C, 5yt3:A, 5yt3:B, 5yt3:D, 3zls:A, 3zlw:A, 3zlx:A, 3zly:A, 3zm4:A
17 8bw9:C 280 73 0.1760 0.0786 0.3014 0.74
18 8x38:A 430 61 0.1200 0.0349 0.2459 1.9
19 2ig3:A 127 28 0.0720 0.0709 0.3214 4.8 2ig3:B
20 7yp9:D 1285 24 0.0880 0.0086 0.4583 6.1
21 2lhn:A 80 49 0.1200 0.1875 0.3061 6.1 5l2l:A, 5l2l:B, 5l2l:F, 5l2l:E
22 3qmn:E 127 45 0.1120 0.1102 0.3111 6.4 3qmn:A, 3qmn:C, 3qmn:B, 3qmn:D, 3qmn:F, 3qmn:G, 3qmn:I, 3qmn:H, 3qmn:J, 3qmn:L, 3qmn:K, 3qmn:Q, 3qmn:M, 3qmn:N, 3qmn:O, 3qmn:P, 3qmn:R, 3qmn:S, 3qmn:U, 3qmn:T, 3qmn:V, 3qmn:W, 3qmn:X
23 4jk1:D 1160 24 0.0880 0.0095 0.4583 6.5 4jk1:I, 4jk2:D, 4jk2:I, 4kmu:D, 4kmu:I, 4kn4:D, 4kn4:I, 4kn7:D, 4kn7:I, 4mex:D, 4mex:J, 4mey:D, 4mey:J, 4s20:D, 4zh3:D, 4zh4:D
24 8txo:J 1162 24 0.0880 0.0095 0.4583 6.5
25 6kj6:D 1265 24 0.0880 0.0087 0.4583 6.5
26 8sy7:J 1052 24 0.0880 0.0105 0.4583 6.5 8sy5:J
27 6n61:D 1239 24 0.0880 0.0089 0.4583 6.5 6n60:D, 6n62:D, 4xsx:J, 4xsy:J, 4xsz:J
28 6awc:04 1345 24 0.0880 0.0082 0.4583 6.6 6b6h:D, 7c17:D, 8egb:J, 6flp:D, 6flq:D, 8fvr:G, 8fvw:G, 6gfw:D, 6gh5:D, 4jkr:D, 4jkr:J, 6ldi:D, 4ljz:J, 4lk0:D, 4lk0:J, 4lk1:J, 4llg:D, 4llg:J, 7m8e:D, 7mkd:J, 7mke:J, 7mki:J, 7mkj:J, 7mkq:D, 7n4e:D, 6omf:D, 6p18:D, 6p19:D, 6p1k:J, 6pb4:D, 6pb5:D, 6pb6:D, 8pbl:G, 6pmi:D, 6pmj:D, 7py3:D, 7pyj:D, 7pyk:D, 8re4:D, 8rea:D, 8reb:D, 8rec:D, 8red:D, 8ree:D, 8to6:J, 8to8:J, 8toe:J, 7ubm:D, 7ubn:D, 5ui8:J, 7uwe:J, 7uwh:J, 5vt0:J, 7vwy:D, 7vwz:D, 7w5w:D, 7w5x:D, 7w5y:D, 6xas:J, 6xav:J, 6xh7:D, 6xh8:D, 6xl5:D, 6xlj:D, 6xll:D, 6xlm:D, 6xln:D, 7xui:J, 8y6u:D, 7ypb:D, 4zh2:J, 4zh3:J, 4zh4:J, 6ztj:CD, 6ztl:CD, 6ztm:CD, 6ztn:CD, 6zto:CD, 6ztp:CD, 6zu1:CD
29 5ipl:D 1173 24 0.0880 0.0094 0.4583 6.6 6byu:D, 6byu:J, 6cux:D, 6cux:J, 8hkc:F, 8igr:J, 8igs:J, 4ljz:D, 4lk1:D, 6pst:J, 4s20:I, 5uac:D, 5uac:J, 5uag:D, 5uag:J, 5uah:D, 5uah:J, 5uaj:D, 5uaj:J, 5ual:D, 5ual:J, 5uaq:D, 5uaq:J, 6vjs:D, 6vjs:I, 5vsw:D, 5vsw:J, 5w1s:D, 5w1s:J, 5w1t:D, 5w1t:J, 4xsx:D, 4xsy:D, 4xsz:D, 4yfk:D, 4yfk:J, 4yfn:D, 4yfn:J, 4yfx:D, 4yfx:J, 4yg2:D, 4yg2:J, 4zh2:D
30 5my1:Y 1372 24 0.0880 0.0080 0.4583 6.6 8aby:D, 8abz:D, 8ac0:D, 8ac1:D, 8ac2:D, 8acp:D, 7adb:Y, 7adc:Y, 7add:Y, 7ade:Y, 8ad1:D, 6alf:J, 6alg:J, 6alh:J, 6asx:J, 7bef:D, 7beg:D, 6bjs:J, 6c6s:J, 6c6t:J, 6c6u:J, 6c9y:D, 7c97:D, 6ca0:D, 7chw:D, 7d7c:D, 7d7d:D, 7dy6:D, 8e3f:B, 8e5k:B, 8e5o:B, 8e6x:B, 8e6z:B, 8eg7:J, 8eg8:J, 8eh8:J, 8eh9:J, 8eha:J, 8ehf:J, 8ehi:J, 8f1i:J, 8f1j:J, 8f1k:J, 8f3c:J, 8fix:D, 8fiy:D, 8ftd:J, 8g00:J, 8g1s:J, 8g2w:J, 8g4w:J, 8g7e:J, 8g8z:J, 6gov:Y, 5ipm:D, 5ipn:D, 3iyd:D, 6jbq:D, 6jnx:D, 8jo2:D, 6k4y:D, 8k58:D, 8k5a:D, 7khb:D, 7khc:D, 7khe:D, 7khi:D, 3lu0:D, 7mkn:D, 7mko:D, 7mkp:D, 5ms0:D, 6n4c:D, 6n57:J, 6n58:J, 5nwt:D, 6oul:J, 8pdy:J, 8pen:J, 8pfg:J, 8pfj:J, 8ph9:J, 8phk:J, 8pib:J, 8pid:J, 8pil:J, 8pim:J, 6psq:J, 6psr:J, 6pss:J, 6psu:J, 6psv:J, 6psw:J, 7py0:D, 7py1:D, 7py5:D, 7py6:D, 7py7:D, 7py8:D, 7q0j:D, 7q0k:D, 6rh3:D, 6ri7:D, 6ri9:D, 6rin:D, 6rip:D, 7szj:D, 7szk:D, 8to1:J, 8tom:J, 6tqn:Y, 6tqo:Y, 8u3b:D, 8upo:AE, 8upr:AE, 8uql:AE, 8uqm:AE, 8uqp:AE, 8ur0:AE, 8urh:AE, 8uri:AE, 8urx:AE, 8ury:AE, 6utv:DDD, 6utw:DDD, 6utx:DDD, 6uty:DDD, 6utz:DDD, 6uu0:DDD, 6uu1:DDD, 6uu2:DDD, 6uu3:DDD, 6uu4:DDD, 6uu5:DDD, 6uu6:DDD, 6uu7:DDD, 6uu8:DDD, 6uu9:DDD, 6uua:DDD, 6uub:DDD, 6uuc:DDD, 6vu3:AE, 6vyq:AE, 6vyr:AE, 6vys:AE, 6vyt:AE, 6vyu:AE, 6vyw:AE, 6vyx:AE, 6vyy:AE, 6vyz:AE, 6vz2:AE, 6vz3:AE, 6vz5:AE, 6vz7:AE, 6vzj:AE, 6wmu:D, 6x26:J, 6x2f:J, 6x2n:J, 6x43:J, 6x4w:J, 6x4y:J, 6x50:J, 6x6t:AE, 6x7f:AE, 6x7k:AE, 6x9q:AE, 6xdq:AE, 6xdr:AE, 6xgf:AE, 6xii:AE, 6xij:AE, 6xl9:D, 7xue:J, 7xug:J, 4yln:D, 4yln:J, 4yln:P, 4ylo:D, 4ylo:J, 4ylo:P, 4ylp:D, 4ylp:J, 4ylp:P, 7ypa:D, 6z9p:Y, 6z9q:Y, 6z9r:Y, 6z9s:Y, 6z9t:Y
31 8sy6:J 1269 24 0.0880 0.0087 0.4583 7.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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