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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TLDQKNKQKLQLIEELTSNADQVQRQVLEEILTRNADVEYLRRHDLNGRTDRETFKNIMPVITYEDIEPEINRIANGDKS
PILSSKPISEFLTSSGTSGGERKLMPTIEEELDRRSLLYSLLMPVMSQFVPGLENGKGMYFLFIKSESKTPGGLPARPVL
TSYYKSSHFKDPYTNYTSPNETILCSDSYQSMYSQMLCGLCQHQEVLRVGAVFASGFIRAIKFLEKHWIELVRDIRTGTL
SSLITDPSVREAVAKILKPSPKLADFVEFECKKSSWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYA
SSECYFGVNLRPLCKPSEVSYTLIPSMAYFEFLPVHRNALTEKEQQELVDLVDVKLGQEYELVVTTYAGLCRYRVGDLLR
VTGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCLDPPSV
FEDCCLAVEESFNTVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYF
SPKCPK

The query sequence (length=566) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5kod:D 566 570 0.9806 0.9806 0.9737 0.0
2 7vka:A 595 584 0.9064 0.8622 0.8784 0.0 5kod:A, 5kod:B, 5kod:C, 7vka:B
3 4b2g:B 572 574 0.6749 0.6678 0.6655 0.0 4b2g:A
4 7dk8:A 558 562 0.6555 0.6649 0.6601 0.0
5 6e1q:A 569 568 0.5124 0.5097 0.5106 0.0 6avh:A, 6avh:C, 6avh:D
6 4epm:A 554 558 0.4965 0.5072 0.5036 0.0 4eq4:A, 4eq4:B, 4eql:A, 4eql:B, 4l39:A, 4l39:B, 6oms:A, 6oms:B
7 6avh:B 541 565 0.4876 0.5102 0.4885 0.0
8 4ewv:B 492 558 0.4382 0.5041 0.4444 7.09e-152 4ewv:A
9 5ech:A 569 561 0.4028 0.4007 0.4064 1.04e-142 5ech:D, 5eci:A, 5eci:D, 5eck:A, 5eck:D, 5ecl:A, 5ecl:D, 5ecm:A, 5ecm:D, 5ecn:A, 5ecn:D, 5eco:A, 5eco:D, 5ecp:A, 5ecp:D, 5ecq:A, 5ecq:D, 5ecr:A, 5ecr:D, 4epl:A, 5gzz:A
10 4lt6:A 467 94 0.0459 0.0557 0.2766 2.7 4lt6:B
11 8v6g:A 1050 49 0.0283 0.0152 0.3265 4.4 8v6h:A, 8v6i:A, 8v6j:A
12 8g99:A 1063 49 0.0283 0.0151 0.3265 4.6 8g9f:A, 8g9l:A, 8g9n:A, 8g9o:A, 8ucu:A, 8ucv:A, 8ucw:A, 8v5m:A, 8v5n:A, 8v5o:A
13 6o75:A 710 133 0.0548 0.0437 0.2331 6.0 6o74:A, 6o78:A, 6o79:A, 6o7b:A, 6o7d:A
14 8k1l:A 979 64 0.0336 0.0194 0.2969 6.1
15 6muu:A 780 133 0.0548 0.0397 0.2331 6.5 6iqw:A, 6mur:A, 6mus:A, 6mut:A, 6o7e:A, 6o7h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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