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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TKTLKLRIVRPYNSAEVEKIVADEKNNREKIALEKNKDKVKEACSKHLKVAAYCTTQVERNACLFCKARKLDDKFYQKLR
GQFPDAVFWQEISEIFRQLQKQAAEIYNQSLIELYYEIFIKGKGIANASSVEHYLSDVCYTRAAELFKNAAIASGLRSKI
KSNFRLKELKNMKSGLPTTKSDNFPIPLVKQKGGQYTGFEISNHNSDFIIKIPFGRWQVKKEIDKYRPWEKFDFEQVQKS
PKPISLLLSTQRRKRNKGWSKDEGTEAEIKKVMNGDYQTSYIEVKRGSKICEKSAWMLNLSIDVPKIDKGVDPSIIGGID
VGVKSPLVCAINNAFSRYSISDNDLFHFNKKMFARRRILLKKNRHKRAGHGAKNKLKPITILTEKSERFRKKLIERWACE
IADFFIKNKVGTVQMENLESMKRKEDSYFNIRLRGFWPYAEMQNKIEFKLKQYGIEIRKVAPNNTSKTCSKCGHLNNYFN
FEYRKKNKFPHFKCEKCNFKENADYNAALNISNPKLKST

The query sequence (length=519) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7l48:A 522 519 1.0000 0.9943 1.0000 0.0 7c7l:A, 7l48:B, 7l49:A, 7l49:B
2 7c7l:B 372 429 0.6898 0.9624 0.8345 0.0
3 8j12:A 424 453 0.2235 0.2736 0.2561 1.16e-31 8dzj:A, 8dzj:B, 8j1j:A, 8j3r:A, 7wju:A, 7wju:B
4 8j1j:B 387 248 0.1387 0.1860 0.2903 3.49e-27 8j12:B, 8j3r:B
5 8hr5:A 466 214 0.1349 0.1502 0.3271 5.95e-26
6 6xmg:A 638 179 0.0848 0.0690 0.2458 0.006 6xmf:A
7 8h1j:A 362 263 0.1214 0.1740 0.2395 0.008 8ex9:A, 8exa:A
8 8iaz:A 384 203 0.0983 0.1328 0.2512 0.008
9 8i3q:A 595 138 0.0674 0.0588 0.2536 0.017
10 7lsc:A 161 90 0.0424 0.1366 0.2444 0.63 7lsc:B, 7lsc:C, 7lsc:D, 6mgh:A, 6mgh:B, 6mgh:C, 6mgh:D, 6mgh:E, 6mgh:F, 6mgh:G, 6mgh:H
11 7odf:A 703 88 0.0462 0.0341 0.2727 0.66
12 3zs6:A 506 98 0.0597 0.0613 0.3163 0.78
13 7ebp:A 526 136 0.0636 0.0627 0.2426 1.2 7ebp:B, 7ebq:A
14 7q8e:A 397 43 0.0308 0.0403 0.3721 2.1 6gs2:B, 6gs2:D, 6h5e:B, 6h5e:D, 7q8e:C
15 2gyq:A 162 62 0.0347 0.1111 0.2903 3.1 2gyq:B
16 7lyt:A 712 58 0.0385 0.0281 0.3448 4.6 7lys:A, 7m5o:A
17 7zok:A 51 23 0.0193 0.1961 0.4348 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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