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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKKKNITRPFEDQTSLEFFSKKSDCSLFM
FGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKNSKCPEGTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPT
VSNIRLAGLEYVLHFTALNGKIYFRSYKLLLKKRTPRIELEEMGPSLDLVLRRTHLASDDLYKLSMKMPKNISHDTFGTT
YGRIHMQKQDLSKLQ

The query sequence (length=255) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fl0:ND 270 265 0.9961 0.9407 0.9585 0.0 8ir1:T, 8ir3:T
2 8pv1:Cf 285 272 0.4549 0.4070 0.4265 1.35e-63 8i9r:Cy, 7ozs:C, 8pv2:Cf, 8pv3:Cf, 8pv4:Cf, 8pv5:Cf, 8pv7:Cf, 8pvk:Cf, 8pvl:Cf
3 7uoo:v 293 276 0.4627 0.4027 0.4275 1.20e-61 5a53:C, 7bt6:v, 7btb:v, 6ft6:v, 3jct:v, 6m62:v, 7oh3:v, 7ohq:v, 7oht:v, 7ug6:v, 7uqb:v, 7uqz:v, 7v08:v
4 8fkp:SO 307 103 0.1216 0.1010 0.3010 4.01e-06 8fkq:SO, 8fkr:SO, 8fks:SO, 8fkt:SO, 8fku:SO, 8fkv:SO, 8fkw:SO, 8fkx:SO, 8fky:SO
5 7nac:A 266 121 0.1255 0.1203 0.2645 0.001 6c0f:b, 6cb1:b, 8e5t:b, 6elz:A, 6em1:A, 6em3:A, 6em4:A, 7ohr:A, 7ohs:A, 7ohv:A, 7ohw:A, 7r7a:A, 8v83:A, 8v84:A, 8v87:A, 5z3g:a
6 8i9p:CA 260 143 0.1451 0.1423 0.2587 0.001 8i9r:CA, 8i9t:CA, 8i9v:CA, 8i9w:CA, 8i9x:CA, 8i9y:CA, 8i9z:CA, 8ia0:CA
7 8eti:A 254 107 0.0980 0.0984 0.2336 0.077 8esq:A, 8esr:A, 8etg:A, 8eth:A, 8eup:A, 8euy:A, 8ev3:A
8 9c57:G 878 59 0.0824 0.0239 0.3559 6.2
9 6c0f:I 288 104 0.1059 0.0938 0.2596 6.3 6cb1:I, 6em1:x, 6em3:x, 6em4:x, 6em5:x, 7ohs:x, 7ohw:x, 7ohx:x, 8v83:x, 8v84:x, 5z3g:O
10 8om2:R 101 26 0.0431 0.1089 0.4231 7.2 8d8j:R, 8d8k:R, 8d8l:R, 5mrc:RR, 5mre:RR, 5mrf:RR, 8om3:R, 8om4:R
11 7k3p:A 329 51 0.0549 0.0426 0.2745 7.9 7k3p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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