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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCL
GLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRLVLAIADGTVSVDGREIYSAEGLRV
GLFTSTDSF

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7bka:E 171 170 1.0000 0.9883 0.9941 4.47e-124 4b0b:A, 4b0b:B, 4b0c:A, 4b0c:B, 4b0c:D, 4b0c:C, 4b0c:E, 4b0i:A, 4b0i:B, 4b0i:C, 4b0i:D, 4b0i:E, 4b0j:A, 4b0j:B, 4b0j:C, 4b0j:D, 4b0j:E, 4b0j:F, 4b0j:G, 4b0j:H, 4b0j:I, 4b0j:J, 4b0j:K, 4b0j:L, 4b0j:M, 4b0j:N, 4b0j:O, 4b0j:P, 4b0j:Q, 4b0j:R, 4b0j:S, 4b0j:T, 8b72:A, 8b72:B, 4b8u:A, 4b8u:B, 7bhj:B, 7bhj:C, 7bhj:D, 7bhj:E, 7bis:A, 7bis:B, 7bis:C, 7bis:D, 7bis:E, 7bk9:A, 7bk9:B, 7bk9:C, 7bk9:D, 7bk9:E, 7bka:A, 7bka:B, 7bka:C, 7bka:D, 4cl6:A, 4cl6:B, 4cl6:C, 4cl6:D, 4cl6:E
2 1mka:A 171 169 0.6864 0.6784 0.6864 1.12e-83 4keh:A, 4keh:B, 1mka:B
3 5f6r:A 173 167 0.6568 0.6416 0.6647 3.09e-76 5f6r:B
4 6n3p:D 146 126 0.2130 0.2466 0.2857 0.001 6n3p:A, 6n3p:B, 6n3p:C, 6n3p:E, 6n3p:F
5 3b7j:A 152 133 0.1953 0.2171 0.2481 0.003 3b7j:C, 3cf8:A, 3cf8:B, 3cf8:C, 3cf9:A, 3cf9:B, 3cf9:C, 3d04:A, 3d04:B, 3d04:C, 3d04:D, 3doy:A, 3doy:B, 3doy:C, 3doy:D, 3doz:A, 3doz:B, 3doz:C, 3doz:D, 3dp0:A, 3dp0:B, 3dp1:A, 3dp1:B, 3dp1:C, 3dp1:D, 3dp2:A, 3dp2:B, 3dp2:C, 3dp3:A, 3dp3:B, 3dp3:C, 3dp3:D, 3ed0:A, 3ed0:B, 3ed0:C, 2glm:A, 2glm:B, 2glp:A, 2glp:B, 2glp:C, 2glp:D, 6ihc:A, 6ihc:B, 4zjb:A
6 7qv0:A 139 131 0.1953 0.2374 0.2519 0.007 7qv0:B, 7qv0:C
7 3az8:F 146 59 0.0828 0.0959 0.2373 0.31 3az8:C, 3az8:D, 3az8:E, 3az8:O, 3az8:P, 3az8:Q, 3az8:R, 3az9:C, 3az9:D, 3az9:E, 3az9:F, 3az9:M, 3az9:N, 3az9:O, 3az9:P, 3az9:Q, 3az9:R, 3aza:A, 3aza:B, 3aza:C, 3aza:D, 3aza:M, 3aza:N, 3aza:O, 3aza:P, 3aza:Q, 3aza:R, 3aza:U, 3aza:V, 3azb:C, 3azb:D, 3azb:G, 3azb:H, 3azb:I, 3azb:J, 3azb:O, 3azb:P
8 8ro4:A 339 25 0.0769 0.0383 0.5200 1.2 8ro4:C, 8ro4:D, 8ro4:B, 8ro4:E, 8ro4:F
9 6o9w:A 227 32 0.0769 0.0573 0.4062 3.9
10 8xqw:A 988 61 0.1243 0.0213 0.3443 4.1
11 4hnn:F 320 39 0.0828 0.0437 0.3590 5.3 4hnn:A, 4hnn:B, 4hnn:C, 4hnn:D, 4hnn:E, 4hnn:G, 4hnn:H
12 1zpu:A 529 12 0.0473 0.0151 0.6667 5.3 1zpu:B, 1zpu:C, 1zpu:D, 1zpu:E, 1zpu:F
13 7usl:C 715 64 0.1006 0.0238 0.2656 6.0
14 8exs:A 556 32 0.0769 0.0234 0.4062 7.8 8c0p:A, 8c0p:B, 8c0s:A, 8c0s:B, 8cf3:C, 8cf3:E, 8exp:A, 8exp:B, 8exq:B, 8exq:A, 8exr:B, 8exr:A, 8exs:B, 8ext:A, 8ext:B, 6o9w:B, 3q7z:A, 3q7z:B, 3q81:A, 3q81:B, 3q82:A, 3q82:B, 1xa1:A, 1xa1:B, 1xa1:C, 1xa1:D, 1xa7:A, 1xa7:B, 1xkz:A, 1xkz:B, 1xkz:C, 1xkz:D
15 5tw7:F 490 58 0.1124 0.0388 0.3276 9.2 5tw7:E
16 4jdr:A 471 51 0.0947 0.0340 0.3137 9.4 4jdr:B, 4jq9:A, 4jq9:B, 4jq9:C, 4jq9:D, 4jq9:E, 4jq9:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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