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BioLiP
>protein
TKQEKTILNMARFIRSQALTILEKANELDADEIADIAESIHDHADEIYRSALAR

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1f4n:A 59 54 1.0000 0.9153 1.0000 5.80e-33 1f4m:A, 1f4m:C, 1f4m:E, 1f4n:B
2 1yo7:A 120 53 0.8148 0.3667 0.8302 1.83e-26 1yo7:B
3 1yo7:A 120 28 0.4259 0.1917 0.8214 1.42e-09 1yo7:B
4 5x51:M 1386 51 0.3519 0.0137 0.3725 2.6 5x4z:A, 5x51:A, 8yfr:A
5 5xon:A 1427 37 0.2778 0.0105 0.4054 4.7 6a5l:A, 6a5o:A, 6a5p:A, 6a5r:A, 6a5t:A, 6a5u:A, 8h0v:A, 8h0w:A, 8he5:A, 6inq:A, 6ir9:A, 6j4w:A, 6j4x:A, 6j4y:A, 6j4z:A, 6j50:A, 6j51:A, 8jh2:A, 8jh3:A, 8jh4:A, 7wbv:A, 7wbw:A, 7wbx:A, 5x4z:M, 5x50:A, 7xn7:A, 5xog:A, 7xse:A, 7xsx:A, 7xsz:A, 7xt7:A, 7xtd:A, 7xti:A, 8yfq:A
6 4kp4:A 219 33 0.2407 0.0594 0.3939 6.5 1bxd:A
7 6efn:A 383 34 0.2222 0.0313 0.3529 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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