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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TKQEKIEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADLNESEEAGMKKVSDWLEEL
HVEEEESKHVLHIIANMSIEGKLVQDADRLDALGAIGIARTFAYGGAKGRLMYDPTIPPRDPSLNHFYEKLLKLKDLMNT
NAAKQEAEVRHRYMEQFIEQFMKEWNAQ

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3djb:A 188 188 1.0000 1.0000 1.0000 3.87e-140 3djb:B
2 5dqw:A 188 189 0.4202 0.4202 0.4180 2.86e-44 5dqw:B
3 2qgs:A 209 201 0.4415 0.3971 0.4129 1.01e-43 2qgs:B
4 3b57:A 180 164 0.3936 0.4111 0.4512 3.81e-43
5 2pq7:A 174 177 0.2606 0.2816 0.2768 9.01e-13
6 8wmy:A 198 33 0.0851 0.0808 0.4848 0.49 8wmy:B
7 6oiw:A 504 54 0.0957 0.0357 0.3333 0.59 6oi7:A, 6oi7:B, 6oi7:C, 6oi7:D, 6oi7:E, 6oi7:F, 6oiv:A, 6oiv:B, 6oiv:C, 6oiv:D, 6oiv:E, 6oiv:F, 6oiw:B, 6oiw:C, 6oiw:D, 6oiw:E, 6oiw:F, 6oiy:A, 6oiy:B, 6oiy:C, 6oiy:D, 6oiy:E, 6oiy:F, 4x9e:A, 4x9e:B
8 6oix:C 478 53 0.0957 0.0377 0.3396 0.72 6oix:A, 6oix:B, 6oix:D, 6oix:E, 6oix:F, 7u66:A, 7u66:B, 7u66:C, 7u66:D, 7u66:E, 7u66:F, 7u67:A, 7u67:D, 7u67:C, 7u67:B, 7u67:F, 7u67:E
9 3cir:A 541 105 0.1170 0.0407 0.2095 1.2
10 3nqw:A 178 72 0.1170 0.1236 0.3056 4.5 3nqw:B
11 2ogi:B 194 33 0.0745 0.0722 0.4242 4.5 2ogi:A
12 5d6j:A 630 67 0.1117 0.0333 0.3134 4.6 5ey8:A, 5ey8:B, 5ey8:C, 5ey8:D, 5ey8:E, 5ey8:F, 5ey8:G, 5ey8:H, 5icr:A, 5icr:B, 5icr:C, 5icr:D
13 4ipn:E 463 60 0.1117 0.0454 0.3500 5.5 4ipn:B
14 7xnt:C 320 43 0.0585 0.0344 0.2558 6.1
15 2o08:A 187 44 0.0745 0.0749 0.3182 6.1 2o08:B
16 3l0q:A 541 30 0.0798 0.0277 0.5000 6.1
17 4v5o:AM 154 43 0.0798 0.0974 0.3488 6.4 4bts:AM, 4bts:BM, 4bts:CM, 4bts:DM, 4v5o:BM
18 3pju:A 249 107 0.1383 0.1044 0.2430 9.8 3pjt:A, 3pjt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218