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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TKPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKE
LLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVKGYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPT
VSGAALGDSNSGMHLMIGILAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDGN
PLSFDNITSVPRGGNAGGGGQPGWMLKCKGWETDADSYVYFTIAANMWPQICDMIDKPEWKDDPAYNTFEGRVDKLMDIF
SFIETKFADKDKFEVTEWAAQYGIPCGPVMSMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEITRAPLL
GEHTDEVLKELGLDDAKIKELHAKQVV

The query sequence (length=427) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1p5r:A 427 427 0.9977 0.9977 0.9977 0.0 1p5r:B, 1t3z:A, 1t3z:B, 1t4c:A, 1t4c:B, 1vgq:A, 1vgq:B, 1vgr:A, 1vgr:B, 2vjk:A, 2vjk:B, 2vjl:A, 2vjl:B, 2vjm:A, 2vjm:B, 2vjo:A, 2vjo:B
2 1q6y:A 417 426 0.5972 0.6115 0.5986 4.98e-170 1pt5:A, 1pt5:B, 1pt8:A, 1pt8:B, 1q7e:A
3 3ubm:B 430 440 0.5738 0.5698 0.5568 6.05e-166 3ubm:A, 3ubm:C, 3ubm:D
4 9br7:C 403 432 0.3091 0.3275 0.3056 4.44e-54 9br7:A, 9br7:D
5 5yx6:A 360 406 0.2389 0.2833 0.2512 1.62e-22
6 8apq:A 406 445 0.2576 0.2709 0.2472 2.32e-20 8apq:B, 8apq:C, 8apq:D, 8apq:E, 8apq:F
7 2yim:A 355 208 0.1429 0.1718 0.2933 7.40e-20 2gce:A, 2gce:B, 2gce:C, 2gce:D, 2gci:A, 2gci:B, 2gci:C, 2gci:D, 2gd0:A, 2gd0:B, 2gd0:C, 2gd0:D, 2gd2:A, 2gd2:B, 2gd2:C, 2gd2:D, 2gd6:A, 2gd6:B, 2gd6:C, 2gd6:D, 2yim:B, 2yim:C, 2yim:D
8 1xvt:A 402 215 0.1452 0.1542 0.2884 5.54e-12 1xa4:B, 1xvu:A, 1xvv:A
9 5a65:A 208 112 0.0773 0.1587 0.2946 0.31 5a64:A, 5a64:B, 5a65:B
10 1hbr:A 141 58 0.0468 0.1418 0.3448 0.51 1hbr:C
11 6agg:Z 420 73 0.0562 0.0571 0.3288 0.88 3amt:A, 3amu:A, 3au7:A, 4rvz:Z, 5xob:Z
12 6nys:B 679 51 0.0398 0.0250 0.3333 7.7 6nys:A
13 5jgw:A 314 127 0.0843 0.1146 0.2835 7.7 5jgw:B, 5jgw:C, 5jgw:D, 5jgy:A, 5jgy:B
14 3og2:A 986 43 0.0398 0.0172 0.3953 8.8 3ogr:A, 3ogs:A, 3ogv:A
15 4v7f:P 269 99 0.0609 0.0967 0.2626 9.7 6n8k:D, 6n8l:D, 6ylg:D, 6ylh:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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