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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TKPFTLPILTISELTNSRFPIPIEQLYTAPNENNVVQCQNGRCTLDGELQGTTQLLSSAVCSYRGRTVANSGDNWDQNLL
QLTYPSGASYDPTDEVPAPLGTQDFSGILYGVLTQDNVSEGTGEAKNAKGVYISTTSGKFTPKIGSIGLHSITENVHPNQ
QSRFTPVGVAQNENTPFQQWVLPHYAGALALNTNLAPAVAPTFPGEELLFFRSRVPCVQGLRGQDAFIDCLLPQEWVNHF
YQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGAYPLVVPPNGHFRFDSWVNQFYSLAPM

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zvc:B 311 309 0.9935 0.9871 0.9935 0.0 6jyn:A, 6jyn:B, 6jyn:C, 6jyn:D, 6jys:A, 6jys:B, 6jys:C, 6jys:D, 5zvc:A
2 4rlz:B 307 309 0.7217 0.7264 0.7217 4.24e-167 4rlz:A, 4rm0:A, 4rm0:B
3 5lkg:A 308 312 0.6311 0.6331 0.6250 3.09e-140 5lkc:A, 5lkc:B, 5lkg:B, 5lkk:A, 5lkk:B, 5zv5:A, 5zv5:B, 5zv7:A, 5zv7:B
4 3r6k:A 301 310 0.6343 0.6512 0.6323 2.19e-134
5 3pa1:A 315 320 0.6149 0.6032 0.5938 5.66e-130 5bsx:A, 5bsy:A, 6gw1:A, 6gw1:B, 6gw2:A, 6gw2:B, 6gy9:A, 6gy9:B, 5hza:A, 5hza:B, 5hzb:B, 5hzb:A, 3ony:A, 3ony:B, 3ony:C, 3pa1:B, 3pa2:A, 3pa2:B, 3q38:A, 3q39:A, 3q39:B, 3q3a:B, 3q3a:A, 3ry8:A, 8y6c:B, 8y6c:A, 8y6d:B, 8y6d:A, 4z4r:A, 4z4r:B, 4z4s:A, 4z4s:B, 4z4t:A, 4z4t:B, 4z4u:A, 4z4u:B, 4z4v:A, 4z4v:B, 4z4w:A, 4z4w:B, 4z4y:A, 4z4z:A, 4z4z:B
6 6gw4:A 307 311 0.6117 0.6156 0.6077 3.39e-129
7 6is5:B 304 309 0.5793 0.5888 0.5793 9.32e-129 6is5:A, 6is5:C, 6is5:D
8 6gvz:A 305 310 0.6084 0.6164 0.6065 2.95e-127 6gw0:A
9 7yqg:B 301 308 0.5793 0.5947 0.5812 1.34e-125 7yqg:A
10 6otf:B 521 313 0.5858 0.3474 0.5783 2.01e-124 6otf:A, 6otf:C, 6ouc:A
11 5iyp:B 306 315 0.5858 0.5915 0.5746 3.69e-122 5iyp:A, 5iyq:A, 5iyq:B, 5iyr:A, 5iyr:B, 5iyw:A, 5iyw:B
12 3sej:C 311 316 0.5858 0.5820 0.5728 9.11e-122 6h9v:A, 2obs:A, 2obt:A, 4ops:B, 4ops:A, 3sej:B, 3sej:E, 3sej:A, 3sej:D, 3sej:F, 3sej:G, 3sej:J, 3sjp:A, 3sld:A, 3sld:C, 3sld:B, 3sld:E, 3sld:D, 3sld:F, 3sld:G, 3sld:J, 3sln:A, 3sln:C, 3sln:B, 3sln:E, 3sln:D, 3sln:F, 3sln:G, 3sln:J, 4x05:D
13 5j35:A 309 315 0.5631 0.5631 0.5524 8.65e-119 6h9v:B, 5j35:B, 5j3o:A, 5j3o:B, 5lfe:A, 5lfe:B, 4op7:A, 4op7:B, 4opo:A, 4opo:B, 8vrv:A, 4wze:A, 4wze:B, 4wzk:A, 4wzk:B, 4wzl:A, 4wzl:B, 4wzt:A, 4wzt:B, 4x05:A, 4x05:B, 4x05:C, 4x06:A, 4x06:B, 4x07:A, 4x07:B, 4x0c:A, 4x0c:B, 8y5v:A
14 3pun:A 302 307 0.5081 0.5199 0.5114 1.57e-110 3pun:B, 3pvd:A, 3pvd:B
15 6h70:A 290 313 0.3819 0.4069 0.3770 2.18e-52 6h70:B, 6h72:A, 6h72:B, 5kw9:A, 5n7m:A, 5n7m:B, 2zl5:A, 2zl5:B, 2zl6:B, 2zl6:A, 2zl7:A, 2zl7:B
16 7vs8:A 310 317 0.3689 0.3677 0.3596 7.92e-52 7vs8:B, 7vs9:A, 7vs9:B
17 7eqt:A 304 313 0.3657 0.3717 0.3610 2.01e-51 7eqw:A
18 4rdl:A 297 308 0.3495 0.3636 0.3506 5.07e-51 4rdk:A, 4rdk:B, 4rdl:B
19 3asq:A 311 317 0.3722 0.3698 0.3628 1.42e-49 3asq:B, 3asr:A, 3asr:B, 3ass:A, 3ass:B, 3ast:A, 3ast:B
20 7er1:A 303 312 0.3495 0.3564 0.3462 2.19e-48
21 4p1v:C 291 309 0.3592 0.3814 0.3592 1.15e-45 4p1v:A, 4p1v:B, 4p1v:D, 4p25:A, 4p25:B, 4p25:C, 4p25:D, 4p2n:B, 4p2n:A, 4p2n:C, 4p2n:D, 4p3i:A, 4p3i:B, 4p3i:C, 4p3i:D
22 5e6t:B 284 310 0.3592 0.3908 0.3581 1.16e-45
23 8uux:B 515 308 0.3172 0.1903 0.3182 2.68e-32 6c6q:A, 6c6q:B, 6e47:A, 6e47:B, 6e48:A, 6e48:B, 6h6l:A, 6h6l:B, 6h6l:C, 6h6l:D, 6h6m:A, 6h6m:B, 6h6m:C, 6h6m:D, 6p4j:A, 6p4j:B, 6p4j:C, 6p4k:A, 6p4k:B, 6p4k:C, 8uux:A, 8uv3:A, 8uv3:C, 6xw6:A, 6xw6:B, 6xw7:A, 6xw7:B, 6xw7:E, 6xw7:F
24 7dry:A 186 83 0.0680 0.1129 0.2530 2.3 7drz:A, 7ds0:A, 7ds1:A
25 6rxu:Cf 174 82 0.0744 0.1322 0.2805 3.1 6rxv:Cf, 6rxx:Cf, 6rxz:Cf
26 8jiw:BI 186 40 0.0356 0.0591 0.2750 3.9 8ip8:ca, 8ip9:ca, 8ipa:ca, 8ipb:ca, 8r6f:I
27 5wyj:SJ 170 32 0.0324 0.0588 0.3125 4.1 7d4i:SJ, 7d5t:SJ, 7d63:SJ, 6ke6:SJ, 6lqp:SJ, 6lqq:SJ, 6lqr:SJ, 6lqs:SJ, 6lqt:SJ, 6lqu:SJ, 6lqv:SJ, 5wyk:SJ
28 8bn3:S8 188 33 0.0356 0.0585 0.3333 5.4 7a1g:V, 7ajt:DI, 7aju:DI, 7b7d:V, 8bqd:V, 8bqx:V, 8c00:V, 8c01:V, 8c83:V, 8cah:V, 8cas:V, 8cbj:I, 8ccs:l, 8cdl:l, 8cdr:l, 8ceh:l, 8cf5:l, 8cg8:l, 8cgn:l, 8civ:l, 8cku:l, 8cmj:l, 5dat:S8, 5dat:s8, 5dc3:S8, 5dc3:s8, 5dge:S8, 5dge:s8, 5dgf:S8, 5dgf:s8, 5dgv:S8, 5dgv:s8, 6eml:V, 8eub:BI, 8evp:BI, 8evq:BI, 8evr:BI, 8evs:BI, 8evt:BI, 8ewb:BI, 8ewc:BI, 6fai:I, 5fci:S8, 5fci:s8, 5fcj:S8, 5fcj:s8, 6gq1:y, 6gqb:y, 6gqv:y, 6hhq:J, 6hhq:s8, 5i4l:S8, 5i4l:s8, 6i7o:V, 6i7o:Vb, 3j6x:S8, 3j6y:S8, 3j77:S8, 3j78:S8, 5juo:FB, 5jup:FB, 5jus:FB, 5jut:FB, 5juu:FB, 8k2d:SI, 8k82:SI, 5ll6:V, 5lyb:S8, 5lyb:s8, 5m1j:I2, 5mc6:V, 5mei:J, 5mei:s8, 7mpi:BI, 7mpj:BI, 7n8b:BI, 5ndg:S8, 5ndg:s8, 5ndv:S8, 5ndv:s8, 5ndw:S8, 5ndw:s8, 7nrc:SV, 7nrd:SV, 5obm:S8, 5obm:s8, 5on6:J, 5on6:s8, 7osa:eS8, 7osm:eS8, 6q8y:V, 6rbd:I, 6rbe:I, 7rr5:SI, 6s47:BJ, 6snt:I, 7suk:L8, 6sv4:V, 6sv4:Vb, 6sv4:Vc, 6t4q:SI, 6t7i:SI, 6t7t:SI, 6t83:Ib, 6t83:j, 5tbw:J, 5tbw:s8, 6tb3:V, 5tga:S8, 5tga:s8, 5tgm:S8, 5tgm:s8, 6tnu:V, 5tzs:8, 4u3m:S8, 4u3m:s8, 4u3n:S8, 4u3n:s8, 4u3u:S8, 4u3u:s8, 4u4n:S8, 4u4n:s8, 4u4o:S8, 4u4o:s8, 4u4q:S8, 4u4q:s8, 4u4r:S8, 4u4r:s8, 4u4u:S8, 4u4u:s8, 4u4y:S8, 4u4y:s8, 4u4z:S8, 4u4z:s8, 4u50:S8, 4u50:s8, 4u51:S8, 4u51:s8, 4u52:S8, 4u52:s8, 4u53:S8, 4u53:s8, 4u55:S8, 4u55:s8, 4u56:S8, 4u56:s8, 4u6f:S8, 4u6f:s8, 4uer:2, 4v88:AI, 4v88:CI, 4v8y:AI, 4v8z:AI, 4v92:BI, 6wdr:I, 5wlc:L8, 6woo:II, 7wtl:SI, 7wtm:SI, 7wtn:SI, 7wto:SI, 7wtp:SI, 7wtq:SI, 7wtr:SI, 6xiq:y, 6xir:y, 8y0u:SI, 6y7c:I, 6z6j:SI, 6z6k:SI, 6zce:J, 7zpq:AI, 6zqb:DI, 6zqc:DI, 6zqd:DI, 6zqe:DI, 6zqf:DI, 6zqg:DI, 7zrs:AI, 6zu9:V, 7zuw:AI, 7zux:DI, 6zvi:q, 7zw0:sV
29 6fyx:I 188 26 0.0324 0.0532 0.3846 6.1 6fyy:I, 6gsm:I, 6gsn:I, 8i7j:I, 5it7:I, 5it9:I, 3j80:I, 3j81:I, 3jam:I, 3jap:I, 8rw1:I, 8s8d:I, 8s8e:I, 8s8f:I, 8s8g:I, 8s8h:I, 8s8i:I, 8s8j:I, 6uz7:I
30 8c3a:K 203 26 0.0356 0.0542 0.4231 8.2 8c3a:CV, 8cq7:K, 8cq7:CV, 8cqw:K, 8cqw:CV, 8cre:K, 8cre:CV, 8oeq:K, 8oeq:CV, 7pzy:J, 7q08:J, 7q0f:J, 7q0p:J, 7q0r:J, 8q5i:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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