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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGEN
AEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFIL
EEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRI
ERLSVIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYF
SSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPL
TGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQLE

The query sequence (length=459) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1o9l:A 468 466 0.9956 0.9765 0.9807 0.0 3k6m:C, 2nrb:A, 3oxo:E, 3oxo:F, 3oxo:G, 3oxo:H
2 8i3y:D 471 451 0.5272 0.5138 0.5366 4.16e-170 8i3y:A, 8i3y:B, 8i3y:C, 8i40:A, 8i40:C, 8i40:D, 6lp1:A, 6lp1:B, 6lp1:C, 6lp1:D
3 1k6d:B 219 237 0.1874 0.3927 0.3629 4.48e-47
4 2ahv:A 512 511 0.2723 0.2441 0.2446 4.18e-15 2ahv:B, 2ahv:C, 2ahv:D, 2ahw:A, 2ahw:B, 2ahw:C
5 6co9:A 295 209 0.1198 0.1864 0.2632 1.83e-08 6coj:A
6 1dp5:A 329 75 0.0566 0.0790 0.3467 0.26 1dpj:A, 1fmu:A, 1fq4:A, 1fq5:A, 1fq6:A, 1fq7:A, 1fq8:A, 1g0v:A, 2jxr:A
7 7svm:A 852 38 0.0327 0.0176 0.3947 5.1 7a3g:B, 7a3g:A, 7a3i:B, 7a3i:C, 7a3j:C, 7a3j:A, 7a3j:B, 7a3k:C, 7a3k:A, 7a3k:B, 7a3l:A, 7a3l:B, 7a3l:C, 7ayq:B, 7ayr:A, 7ayr:B, 6eop:A, 6eop:B, 6eop:C, 6eot:A, 6eot:B, 6eot:D, 6eot:G, 6eot:I, 6eot:K, 6hp8:A, 6hp8:B, 6hp8:C, 7or4:B, 7or4:A, 7oz7:A, 7oz7:B, 6qzw:A, 6qzw:B, 6qzw:C, 7svm:B, 7svm:C, 7svo:A, 7svo:B, 7svo:C, 6trw:A, 6trw:B, 6trw:C, 6trx:B, 6trx:C, 6trx:A
8 8yl9:A 346 40 0.0327 0.0434 0.3750 5.1 8yl9:B, 8yl9:I
9 3c46:A 1095 50 0.0370 0.0155 0.3400 7.8 3c2p:A, 3c2p:B, 3c3l:A, 3c3l:B, 3c46:B, 4ff1:A, 4ff1:B, 4ff2:A, 4ff2:B, 4ff3:A, 4ff3:B, 4ff4:A, 4ff4:B, 3q0a:A, 3q0a:B, 3q22:A, 3q22:B, 3q23:A, 3q23:B, 3q24:A, 3q24:B
10 7mys:A 239 64 0.0436 0.0837 0.3125 9.4 7mys:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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