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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLELEISQLLKESSSG
QPYDAVFPLLNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVND
KLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVVQLKIPAD
LDEDVQLTLRNMALEAFKETDCSGLVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKER
HQDKQKNKY

The query sequence (length=329) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3n8d:B 334 333 0.9848 0.9701 0.9730 0.0 3n8d:A
2 8fff:A 351 350 0.9848 0.9231 0.9257 0.0 2i80:A, 2i80:B, 2i8c:A, 2i8c:B, 7u9k:B, 7u9k:A
3 3i12:A 360 354 0.4438 0.4056 0.4124 2.75e-93 3i12:B, 3i12:C, 3i12:D, 3q1k:A, 3q1k:B, 3q1k:C, 3q1k:D
4 7u56:A 346 341 0.4377 0.4162 0.4223 1.16e-91 7u56:B
5 3rfc:A 344 340 0.4043 0.3866 0.3912 1.38e-80 4l1k:A, 4me6:A, 3r5f:A
6 6u1d:B 326 341 0.3921 0.3957 0.3783 5.32e-65 6u1d:A, 6u1e:A, 6u1e:B, 6u1f:A, 6u1f:B, 6u1g:A, 6u1g:B, 6u1h:A, 6u1h:B, 6u1h:C, 6u1i:C, 6u1j:A, 6u1j:C, 6u1k:A, 6u1k:B, 6u1k:C, 6u1k:D, 2yzm:A, 2yzm:B, 2yzm:C, 2yzn:A, 2yzn:B, 2yzn:C, 2zdg:A, 2zdg:B, 2zdg:C, 2zdg:D, 2zdh:A, 2zdh:B, 2zdh:C, 2zdh:D, 2zdq:A, 2zdq:B
7 6u1h:D 305 325 0.3830 0.4131 0.3877 1.34e-63 6u1i:A
8 1ehi:A 360 361 0.3769 0.3444 0.3435 1.53e-53
9 4fu0:A 343 350 0.3343 0.3207 0.3143 9.29e-52 4fu0:B
10 1e4e:A 341 356 0.3526 0.3402 0.3258 7.43e-51 1e4e:B
11 3se7:C 331 338 0.3313 0.3293 0.3225 4.00e-50 3se7:A, 3se7:B, 3se7:D, 3se7:E, 3se7:F
12 5bpf:C 306 334 0.3435 0.3693 0.3383 7.46e-49 5bpf:B, 5bpf:D, 5bph:A, 5bph:B, 5bph:C, 5bph:D, 5c1o:A, 5c1o:B, 5c1o:C, 5c1o:D, 5c1p:B, 5c1p:C, 5c1p:D
13 4c5a:A 306 334 0.3222 0.3464 0.3174 1.52e-47 4c5a:B, 4c5b:A, 4c5b:B, 4c5c:A, 4c5c:B, 2dln:A, 1iov:A, 1iow:A
14 8evw:B 326 344 0.2948 0.2975 0.2820 8.27e-35 8evw:A, 8evx:A
15 8evx:B 305 335 0.2796 0.3016 0.2746 1.30e-34
16 8evy:B 317 335 0.2857 0.2965 0.2806 9.93e-34 8evy:A, 8evy:C, 8evz:A, 8evz:B, 8evz:C
17 3r5x:D 306 330 0.2857 0.3072 0.2848 4.17e-32 3r5x:A, 3r5x:B
18 3r5x:C 284 313 0.2675 0.3099 0.2812 4.19e-30
19 5nri:A 311 328 0.2644 0.2797 0.2652 8.63e-26 5nrh:A, 5nrh:B, 5nri:B
20 6ll9:B 266 317 0.2705 0.3346 0.2808 7.90e-23
21 3orq:A 373 178 0.1337 0.1180 0.2472 0.003 3orq:B
22 7kct:A 453 117 0.1033 0.0751 0.2906 0.030 7kbl:A, 7kbl:B, 7kc7:A, 7kct:B
23 3ouu:A 446 197 0.1489 0.1099 0.2487 0.040 3ouu:B, 3ouz:A, 3ouz:B
24 8sgx:X 657 135 0.1064 0.0533 0.2593 0.079 8sgx:S, 8sgx:Z, 8sgx:V, 8sgy:V, 8sgy:B, 8sgy:S, 8sgy:Z, 8sgy:Y, 8sgz:V, 8sgz:Z, 8sgz:X, 8sgz:S, 8sgz:B, 8sgz:Y
25 3ax6:A 360 175 0.1337 0.1222 0.2514 0.081 3ax6:B, 3ax6:C, 3ax6:D
26 3vot:A 411 185 0.1216 0.0973 0.2162 0.085 3vot:B
27 7ybu:A 670 133 0.0973 0.0478 0.2406 0.25 7ybu:B, 7ybu:D, 7ybu:F, 7ybu:H, 7ybu:J
28 2dy3:D 344 122 0.0912 0.0872 0.2459 0.27 2dy3:A, 2dy3:B, 2dy3:C
29 5dou:D 1430 60 0.0517 0.0119 0.2833 0.88 5dou:A, 5dou:B, 5dou:C, 6w2j:A
30 2i71:B 376 109 0.1003 0.0878 0.3028 1.0 2i71:A
31 7lg5:A 871 70 0.0578 0.0218 0.2714 3.3 7lg5:B, 7lg5:C, 7lg5:D, 7lgj:A, 7lgj:B, 7lgj:C, 7lgj:D, 7lgq:A, 7lgq:B, 7lgq:C, 7lgq:D, 7txu:A, 7txu:B, 7txu:C, 7txu:D, 7txv:A, 7txv:B, 7txv:C, 7txv:D
32 5vyz:A 1144 67 0.0578 0.0166 0.2836 3.7 5vyw:D, 5vyz:B, 5vyz:D, 5vz0:A, 5vz0:B, 5vz0:D, 7zyy:A, 7zyy:C, 7zyy:B, 7zyy:D, 7zyz:A, 7zz0:A, 7zz1:A, 7zz2:A, 7zz3:A, 7zz3:C, 7zz3:B, 7zz3:D, 7zz4:A, 7zz5:A, 7zz6:D, 7zz6:A, 7zz8:A, 7zz8:C, 7zz8:D, 7zz8:B
33 6yw5:XX 408 27 0.0456 0.0368 0.5556 8.1 6ywe:XX, 6ywx:XX, 6ywy:XX
34 3r5h:A 383 51 0.0456 0.0392 0.2941 9.2 4dlk:A, 4dlk:B, 3q2o:B, 3qff:A, 3qff:B, 3r5h:B, 3v4s:A, 3v4s:B
35 9f2k:A 513 75 0.0578 0.0370 0.2533 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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