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BioLiP
>protein
TKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNK

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6es3:K 72 62 0.9355 0.8056 0.9355 2.30e-38 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
2 1ahd:P 68 57 0.5968 0.5441 0.6491 9.68e-20
3 2r5z:A 75 57 0.5806 0.4800 0.6316 4.23e-19 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
4 1puf:A 77 59 0.5968 0.4805 0.6271 9.48e-19 2lp0:A
5 4uus:A 67 54 0.5484 0.5075 0.6296 3.52e-17 4uus:E
6 4cyc:A 66 54 0.5484 0.5152 0.6296 4.62e-17 1b8i:A
7 5zjr:A 64 56 0.5323 0.5156 0.5893 4.12e-16 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
8 2me6:A 71 55 0.4677 0.4085 0.5273 9.88e-16
9 2h1k:B 60 54 0.5161 0.5333 0.5926 1.62e-15 2h1k:A
10 4rdu:D 62 59 0.4355 0.4355 0.4576 2.42e-15 4rdu:A, 4xrs:I, 4xrs:G
11 1b72:A 68 54 0.4839 0.4412 0.5556 3.34e-15
12 1ig7:A 58 57 0.4355 0.4655 0.4737 2.68e-14
13 8eml:A 58 56 0.4516 0.4828 0.5000 1.93e-13 8eml:B
14 2ld5:A 67 57 0.4677 0.4328 0.5088 3.43e-13
15 3a01:F 61 59 0.4516 0.4590 0.4746 6.48e-13 3a01:B, 3lnq:A
16 1jgg:A 57 56 0.4194 0.4561 0.4643 7.27e-13 1jgg:B
17 5eea:G 63 57 0.4194 0.4127 0.4561 1.45e-12 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
18 8pna:A 67 53 0.3871 0.3582 0.4528 1.46e-12 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
19 6m3d:C 108 53 0.3710 0.2130 0.4340 2.08e-11 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
20 6m3d:C 108 54 0.3871 0.2222 0.4444 2.40e-11 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
21 3rkq:A 58 55 0.4194 0.4483 0.4727 3.89e-11 3rkq:B
22 4qtr:C 57 54 0.3710 0.4035 0.4259 8.83e-11 4qtr:A, 4qtr:B, 4qtr:D
23 1zq3:P 68 49 0.3871 0.3529 0.4898 1.99e-10
24 3a01:A 78 58 0.4194 0.3333 0.4483 2.79e-10 3a01:E
25 1nk2:P 77 59 0.4194 0.3377 0.4407 1.09e-09 1nk3:P
26 8osb:E 62 54 0.4032 0.4032 0.4630 1.24e-09
27 5flv:M 229 53 0.3871 0.1048 0.4528 4.39e-09 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
28 1fjl:A 65 56 0.3710 0.3538 0.4107 1.00e-08 1fjl:B, 1fjl:C
29 2lkx:A 68 54 0.3871 0.3529 0.4444 1.20e-08
30 3cmy:A 60 54 0.3871 0.4000 0.4444 4.84e-08
31 8ik5:C 67 59 0.3387 0.3134 0.3559 7.02e-07 8ike:C, 8ilw:C
32 4rbo:A 55 52 0.2903 0.3273 0.3462 8.60e-07 4rbo:D
33 6e8c:A 135 51 0.3387 0.1556 0.4118 9.47e-07 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 6e8c:A 135 51 0.2903 0.1333 0.3529 2.09e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 4egc:A 539 48 0.3226 0.0371 0.4167 1.55e-05
36 5hod:A 61 27 0.2258 0.2295 0.5185 1.24e-04 5hod:D
37 8ejo:A 56 52 0.2742 0.3036 0.3269 2.08e-04 8ejo:B, 8ejp:A, 8ejp:B
38 9b8u:B 66 47 0.2581 0.2424 0.3404 4.28e-04 9b8u:A, 9b8u:C, 9b8u:D
39 1le8:A 53 49 0.2419 0.2830 0.3061 6.51e-04 1akh:A, 1yrn:A
40 8g8e:X 140 46 0.2742 0.1214 0.3696 0.009 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
41 8bx1:A 127 45 0.2581 0.1260 0.3556 0.011
42 1lfu:P 82 53 0.3065 0.2317 0.3585 0.014 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
43 3l1p:A 147 46 0.2581 0.1088 0.3478 0.014 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
44 1gt0:C 137 56 0.2742 0.1241 0.3036 0.015 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
45 7xrc:C 134 46 0.2419 0.1119 0.3261 0.044 2xsd:C
46 5wc9:A 136 26 0.1774 0.0809 0.4231 0.50 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
47 1nkw:D 178 33 0.1774 0.0618 0.3333 0.97 7a0r:D, 7a0s:D, 7a18:D, 3cf5:D, 3dll:D, 5dm6:D, 5dm7:D, 4io9:D, 4ioa:D, 4ioc:D, 5jvg:D, 5jvh:D, 3pio:D, 3pip:D, 4u67:D, 4v49:BD, 4v4g:BG, 4v4g:HG, 4v4g:DG, 4v4g:JG, 4v4g:FG, 4wfn:D, 2zjp:D, 2zjq:D, 2zjr:D
48 4xrm:B 64 29 0.2097 0.2031 0.4483 1.1 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
49 1akh:B 78 35 0.1935 0.1538 0.3429 1.4 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
50 3d1n:I 150 53 0.2581 0.1067 0.3019 1.9 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
51 1mnm:C 77 33 0.1935 0.1558 0.3636 2.4 1mnm:D
52 7pxc:D 457 40 0.2097 0.0284 0.3250 3.0 5kwa:A, 5kwa:B, 7ljf:A, 7ljf:B, 7ljf:C, 7px9:D, 7pxb:D, 7pxd:D
53 7ood:d 175 28 0.1290 0.0457 0.2857 8.7 7p6z:d, 7pah:d, 7pai:d, 7paj:d, 7pak:d, 7pal:d, 7pam:d, 7pan:d, 7pao:d, 7paq:d, 7par:d, 7pas:d, 7pat:d, 7pau:d, 7ph9:d, 7pha:d, 7phb:d, 7phc:d, 7pi8:d, 7pi9:d, 7pia:d, 7pib:d, 7pic:d, 7pio:d, 7pip:d, 7piq:d, 7pir:d, 7pis:d, 7pit:d
54 8pi9:B 177 33 0.2097 0.0734 0.3939 9.0 1ic8:A, 1ic8:B, 8pi7:A, 8pi7:B, 8pi8:A, 8pi8:B, 8pi9:A, 8pia:A, 8pia:B
55 2o5j:D 1264 36 0.1613 0.0079 0.2778 9.1 2o5j:N
56 4wqs:N 1288 36 0.1613 0.0078 0.2778 9.1
57 3eql:D 1321 36 0.1613 0.0076 0.2778 9.3 3eql:N, 8hsg:J, 8hsh:J, 8hsl:J, 8hsr:J, 6m6a:D, 6m6b:D, 6m6c:D, 2o5i:D, 2o5i:N, 2ppb:D, 2ppb:N
58 3aoh:I 1289 36 0.1613 0.0078 0.2778 9.5 3aoi:I
59 2a68:D 1392 36 0.1613 0.0072 0.2778 9.7 2a68:N, 2a69:D, 2a69:N, 2a6e:D, 2a6e:N, 2a6h:D, 2a6h:N, 2be5:D, 2be5:N, 2cw0:D, 2cw0:N, 1iw7:D, 1iw7:N, 1smy:D, 1smy:N, 1zyr:D, 1zyr:N
60 4wqs:D 1151 36 0.1613 0.0087 0.2778 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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