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BioLiP
>protein
TKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLF
AESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kmv:E 140 137 1.0000 0.9786 1.0000 1.35e-100 3kmv:A, 3kmv:B, 3kmv:C, 3kmv:D, 3kmv:F, 3kmv:G, 3kmv:H
2 3aki:A 448 134 0.5547 0.1696 0.5672 1.91e-45 3akg:A, 3akh:A
3 2d43:A 482 114 0.3212 0.0913 0.3860 7.52e-16 2d44:A, 6sxr:A, 6sxs:AAA, 6sxt:A, 1wd4:A
4 2d43:A 482 116 0.2701 0.0768 0.3190 2.63e-08 2d44:A, 6sxr:A, 6sxs:AAA, 6sxt:A, 1wd4:A
5 2d43:A 482 84 0.1971 0.0560 0.3214 2.52e-04 2d44:A, 6sxr:A, 6sxs:AAA, 6sxt:A, 1wd4:A
6 3vzs:B 249 88 0.1898 0.1044 0.2955 0.015 4n5m:A, 4n5m:B, 4n5n:A, 4n5n:B, 3vzs:A, 3vzs:C, 3vzs:D
7 7vcf:T 763 46 0.1241 0.0223 0.3696 1.3
8 7rh8:A 212 44 0.1095 0.0708 0.3409 2.7
9 7xqp:9 225 84 0.1752 0.1067 0.2857 5.8 8htu:9
10 5xx1:G 735 33 0.0876 0.0163 0.3636 6.7 5xx1:B, 5xx1:C, 5xx1:D, 5xx1:E, 5xx1:F, 5xx1:H, 5xx1:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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