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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TIVGSQFDAQTEHVNKLALDLANKKYRKMALDQAVLRKEKVVVPAEFRTEKDSLISLKKELRSPVYIKGHTGIPDVDLIA
DNRQVFSIRRRLQFQNQSFYFKVGNEEFRCTYDHIQIHPMEKWLVYSKYRRYVVGKPNSIFLPINILPTFQNNAIVRGSE
IVQLLDGIWVNSYNDEYPHSIVIDPENLSKIRPLRIGDIHNFLPDGVEIDKTKCLSLHQKVIKITGDKERKLDIALQ

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6z1p:Az 237 237 1.0000 1.0000 1.0000 3.90e-178
2 4fkz:A 384 135 0.1435 0.0885 0.2519 1.3 4fkz:B
3 1f37:B 110 75 0.0802 0.1727 0.2533 1.7 1f37:A, 1m2a:A, 1m2a:B, 1m2b:A, 1m2b:B, 1m2d:A, 1m2d:B
4 7suk:6 277 37 0.0591 0.0505 0.3784 2.5 7d63:RB, 6ke6:RB, 6lqp:RB, 6lqq:RB, 6lqr:RB, 6lqu:RB, 6lqv:RB, 5wlc:NC, 6zqb:JE
5 6ef8:A 407 43 0.0633 0.0369 0.3488 4.4 6ef8:B, 6ef8:C, 6ef8:D, 6ef8:E, 6ef8:F, 6ef8:G, 6nef:A
6 7moa:D 638 92 0.1013 0.0376 0.2609 5.2 1bht:A, 1bht:B, 5cp9:B, 5cs3:B, 5cs5:B, 5ct3:B, 1gmn:B, 1gmn:A, 1gmo:B, 1gmo:H, 1gmo:F, 1gmo:C, 1gmo:G, 1gmo:A, 1gmo:D, 1gmo:E, 6lz9:B, 3mkp:C, 3mkp:A, 7mo7:A, 7mo8:A, 7mo9:A, 7moa:A, 4o3t:A, 4o3u:A
7 7yg7:A 414 53 0.0675 0.0386 0.3019 6.9 7yg7:B, 7yg7:C, 7yg7:D, 7yg7:E, 7yg7:F, 7yg7:G, 7yg7:H, 7yg7:I, 7yg7:J, 7yg7:K
8 4g9i:A 766 122 0.1181 0.0366 0.2295 7.2 4g9i:B, 4g9i:C, 4g9i:D, 4g9i:E, 4g9i:F
9 1wwz:A 157 40 0.0591 0.0892 0.3500 7.7 1wwz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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