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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TIQQNKDTLSQIVVFPTGNYDKNEANAMVNRLANIDGKYLNALKQNNLKIKLLSGKLTDEKEYAYLKGVVPKGWEGTGKT
WDDVPGLGGSTVALRIGFSNKGKGHDAINLELHATAHAIDHIVLNDISKSAQFKQIFAKEGRSLGNVNFLGVYPEEFFAE
SFAYYYLNQDTNSKLKSACPQTYSFLQNLAK

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6r4z:A 198 191 1.0000 0.9646 1.0000 4.89e-142 5a0p:A, 5a0p:B, 5a0r:A, 5a0r:B, 5a0s:A, 5a0s:B, 5a0x:A, 5a0x:B, 5n12:A, 5n12:B, 2n6j:A, 6r4w:B, 6r4w:A, 6r4x:B, 6r4x:A, 6r4y:B, 6r4y:A, 6r4z:B, 6r50:B, 6r50:A, 6r51:B, 6r51:A, 6r51:C, 6r52:A, 6r52:B, 6r53:A, 6r53:B, 6r54:A, 6r54:B, 6r55:A, 6r55:B, 6r56:A, 6r56:B, 6r57:A, 6r57:B, 6r58:A, 6r58:B, 6r58:C, 6r58:D, 6r59:A, 6r59:B, 6r5a:A, 6r5a:B, 6r5b:B, 6r5b:A, 6r5c:A, 6r5c:B
2 6fpc:C 188 187 0.4712 0.4787 0.4813 3.31e-60 6fpc:A, 6fpc:B, 6fpc:D
3 8dqx:C 330 55 0.0890 0.0515 0.3091 1.6 8dqw:C, 8dqz:C, 8dr0:C, 8dr1:C, 8dr3:C, 8dr4:C, 8dr5:C, 8dr6:C, 8dr7:C, 8fs3:C, 8fs4:C, 8fs5:C, 8fs6:C, 8fs7:C, 8fs8:C, 7sgz:C, 7sh2:C, 7st9:C, 7stb:C, 7ste:C, 1sxj:C, 7tfh:C, 7tfi:C, 7tfj:C, 7tfk:C, 7tfl:C, 7thj:C, 7thv:C, 8thb:C, 8thc:C, 8thd:C, 7ti8:C, 7tib:C, 7tic:C, 7tid:C, 7tku:C, 8tw7:3, 8tw8:3, 8twa:3, 8twb:3, 7u19:C, 7u1a:C, 7u1p:C
4 4v5o:A7 104 36 0.0838 0.1538 0.4444 2.4 4bts:A7, 4bts:B7, 4bts:C7, 4bts:D7, 4v5o:B7
5 2po6:G 204 99 0.1571 0.1471 0.3030 3.0 3huj:G, 3huj:E, 2po6:C, 3sdx:E, 3sdx:G, 6tro:D, 3tzv:G, 6v80:C, 6v80:H, 3vwj:C, 3vwk:C
6 6xs8:A 184 42 0.0681 0.0707 0.3095 6.7
7 1r6n:A 196 85 0.1204 0.1173 0.2706 8.6
8 6e9n:A 409 50 0.0890 0.0416 0.3400 9.7 6e9o:B, 6e9o:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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