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BioLiP
>protein
TIQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4a46:A 63 63 0.9365 0.9365 0.9365 4.23e-36 4a46:B, 4a46:C, 4a46:D, 4a47:A, 4a47:B, 4a47:C, 4a47:D, 2xmj:A, 2xmj:B, 2xmk:A, 2xmk:B, 2xmm:A, 2xmm:B, 2xmt:A, 2xmt:B, 2xmu:A, 2xmu:B, 2xmv:A, 2xmv:B, 2xmv:C, 2xmv:D, 2xmv:E, 2xmv:F
2 4y2i:A 65 59 0.3175 0.3077 0.3390 6.90e-06
3 4a48:B 69 64 0.3175 0.2899 0.3125 0.010 4a48:A, 4a4j:A, 2xmw:A
4 5t7l:A 68 49 0.3016 0.2794 0.3878 0.010 1fee:A, 3iwl:A, 3iwx:A, 3iwx:B, 4qot:A, 4qot:B, 1tl4:A, 4ydx:A, 7zc3:A
5 1afj:A 72 63 0.2857 0.2500 0.2857 0.099
6 6c2h:A 345 55 0.2698 0.0493 0.3091 0.15 6c2q:A, 6c2z:A, 6c4p:A
7 1mwz:A 73 61 0.2698 0.2329 0.2787 0.43
8 8q1w:A 80 54 0.2540 0.2000 0.2963 1.0 8q1w:B, 8q1w:C
9 8ova:Br 367 32 0.1587 0.0272 0.3125 1.5 8ove:Br, 4v8m:Br
10 7xrm:B 253 47 0.2381 0.0593 0.3191 1.9 3abo:B, 3abo:D, 3abq:B, 3abq:D, 3abr:B, 3abr:D, 3abs:B, 3abs:D, 3any:B, 3any:D, 3ao0:B, 3ao0:D, 7xrm:D, 7xrn:B, 7xrn:D, 5ysn:B, 5ysn:D, 5ysr:B, 5ysr:D
11 6a71:B 71 61 0.2222 0.1972 0.2295 3.5 6a72:A
12 7si6:A 873 36 0.1746 0.0126 0.3056 3.9 7si3:A, 7si7:A
13 2vrn:A 185 31 0.2222 0.0757 0.4516 7.4
14 7oya:11 138 34 0.1905 0.0870 0.3529 7.7
15 8s5h:A 507 47 0.2381 0.0296 0.3191 7.8 4coo:A, 4coo:B, 1jbq:A, 1jbq:B, 1jbq:C, 1jbq:D, 1jbq:E, 1jbq:F, 4l0d:A, 4l0d:B, 4l27:B, 4l27:D, 4l27:A, 4l27:C, 4l28:A, 4l28:B, 4l28:C, 4l28:D, 4l3v:B, 4l3v:A, 4l3v:C, 1m54:A, 1m54:B, 1m54:C, 1m54:D, 1m54:E, 1m54:F, 5mms:A, 5mms:F, 5mms:B, 5mms:C, 5mms:D, 5mms:E, 4pcu:A, 4pcu:B, 7qgt:A, 7qgt:B, 8s5h:B, 8s5h:C, 8s5h:D, 8s5h:E, 8s5h:F, 8s5h:G, 8s5h:H, 8s5i:A, 8s5i:B, 8s5i:C, 8s5i:D, 8s5i:E, 8s5i:F, 8s5j:A, 8s5j:B, 8s5j:C, 8s5j:D, 8s5j:E, 8s5j:F, 8s5j:G, 8s5j:H, 8s5j:I, 8s5j:J, 8s5k:A, 8s5k:B, 8s5k:C, 8s5k:D, 8s5k:E, 8s5k:F, 8s5k:G, 8s5k:H, 8s5l:A, 8s5l:B, 8s5l:C, 8s5l:D, 8s5m:A, 8s5m:B, 8s5m:C, 8s5m:D, 8s5m:E, 8s5m:F, 8s5m:G, 8s5m:H, 8s5m:I, 8s5m:J, 8stw:A, 8stw:B, 8stw:C, 8stw:D, 8stw:E, 8stw:F, 4uuu:A, 4uuu:B
16 7oya:C1 348 32 0.1429 0.0259 0.2812 7.8 7oyb:C1
17 4lfl:A 142 49 0.1905 0.0845 0.2449 8.8 4lfl:C, 4lfm:A, 4lfm:C, 4lfn:A, 4lfn:C
18 6b6w:B 628 44 0.1905 0.0191 0.2727 8.9 6b6v:A, 6b6v:B, 6b6w:A, 6b6x:A, 6b6x:B, 6b6y:A, 6b6y:B, 6dc2:A, 6dc2:B, 6dc2:C, 6dc2:D, 6onc:A, 6onc:B, 6onc:C, 6onc:D, 6ond:A, 6ond:B, 6ond:C, 6ond:D, 6ons:A, 7tsj:A, 6vwy:A, 6vwy:B, 6vwz:A, 6vwz:B, 6vx0:A, 6vx0:B, 6vx1:A, 6vx1:B
19 4v8m:Bf 413 22 0.1746 0.0266 0.5000 9.8 8ova:Bf, 8ove:Bf, 5t5h:f

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218