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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TILATAVTAVIVIALAFYLRAKVTSTGVPSGVQLFWEALTIQMRQQIEGSIGMKIAPFVLPLSVTIFVFILISNWLAVLP
LQYLYKAPASDINFVLALALFVFVCYHAAGIWRRGIVGHPIKVVKGHVAFLAPINIVEELAKPISLALRLFGNIFAGGIL
VALIAMFPWYIQWFPNAVWKTFDLFVGLIQAFIFSLLTILYFSQSME

The query sequence (length=207) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7njv:a 238 216 1.0000 0.8697 0.9583 6.07e-144 8g07:a, 8g0a:a, 8g0b:a, 8g0e:a, 7jga:a, 7jgc:a
2 8j0s:a 237 216 0.8116 0.7089 0.7778 7.53e-119 8j57:a, 8jr0:a, 8jr1:a
3 6b2z:a 249 186 0.2319 0.1928 0.2581 4.44e-08 6b2z:M, 6b8h:a, 6b8h:p
4 6j54:a 223 155 0.1836 0.1704 0.2452 0.014 6j5a:a, 6j5i:a, 6j5k:Ba, 6j5k:Ca, 6zmr:a
5 6zpo:a 226 156 0.1691 0.1549 0.2244 0.29 6zbb:a, 6zqm:a, 6zqn:a
6 6rx4:B 379 56 0.0918 0.0501 0.3393 0.88 6rko:B
7 8xmn:A 1277 65 0.0918 0.0149 0.2923 6.6 8i5b:A, 8i5g:A, 8i5x:A, 8i5y:A, 8j4f:A, 8s9b:A, 8s9c:A, 8thg:A, 8thh:A, 7xve:A, 7xvf:A
8 7xm9:A 1230 65 0.0918 0.0154 0.2923 6.6 6j8g:A, 6j8h:A, 6j8i:A, 6j8j:A, 7xmf:A, 7xmg:A, 8xmm:A
9 5ubk:A 709 21 0.0483 0.0141 0.4762 7.4 4k2f:B, 4k2g:B, 3l91:B, 4m1j:C, 3srb:A, 3srb:B, 3src:B, 4wks:C, 4wkt:C, 4wku:B, 4wkv:C, 2wyc:A, 2wyc:B
10 7rbq:A 614 37 0.0725 0.0244 0.4054 8.3 7t39:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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