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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TIHVAIVCAGYNASRDVVTLVKSVLFHRRNPLHFHLIADSIAEQILATLFQTWMVPAVRVDFYNADELKSEVSWIPNKHY
SGIYGLMKLVLTKTLPANLERVIVLDTDITFATDIAELWAVFHKFKGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGYN
TGVILLLLDKLRKMKWEQMWRLTAERELMGMLSTSLADQDIFNAVIKQNPFLVYQLPCFWNVQLSDHTRSEQCYRDVSDL
KVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRNSENLQKQLSELDEDDLCYEFRRERFTVHRTHLYFLHYEYEP
AADSTDVTLVAQLSMDRLQMLEAICKHWEGPISLALYLSDAEAQQFLRYAQGSEVLMSRHNVGYHIVYKEGQFYPVNLLR
NVAMKHISTPYMFLSDIDFLPMYGLYEYLRKSVIQLDLANTKKAMIVPAFETLRYRLSFPKSKAELLSMLDMGTLFTFRY
HVWTKGHAPTNFAKWRTATTPYRVEWEADFEPYVVVRRDCPEYDRRFVGFGWNKVAHIMELDVQEYEFIVLPNAYMIHMP
HAPSFDITKFRSNKQYRICLKTLKEEFQQDMSRRYGFAALKYLTAENNS

The query sequence (length=609) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ui7:A 613 609 1.0000 0.9935 1.0000 0.0 7ui6:A, 7ui6:B
2 7zvj:B 587 616 0.9409 0.9761 0.9302 0.0 7zvj:A
3 4wm0:A 299 267 0.1084 0.2207 0.2472 1.41e-13 4wlm:A, 4wlm:B, 4wlz:A, 4wlz:B, 4wma:A, 4wmb:A, 4wmi:A, 4wmk:A, 4wn2:A, 4wnh:A
4 3v17:A 276 111 0.0443 0.0978 0.2432 2.2 3v17:C, 3v17:B, 3v17:D
5 5h18:A 272 233 0.0870 0.1949 0.2275 4.1 5y7f:A
6 1n5q:B 112 30 0.0213 0.1161 0.4333 4.1 1n5s:B, 1n5t:B, 1n5v:A
7 8hd2:A 314 42 0.0213 0.0414 0.3095 4.5
8 6g2g:B 273 59 0.0328 0.0733 0.3390 5.4 6g2g:A
9 2e5s:A 98 70 0.0263 0.1633 0.2286 7.9 3d2q:A, 3d2q:B, 3d2q:C, 3d2q:D, 3d2s:A, 3d2s:B, 3d2s:C, 3d2s:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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