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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIV
VDKEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVETGREGVKALK

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1vrc:B 129 129 1.0000 1.0000 1.0000 1.17e-91 1vrc:A
2 1c7i:A 483 60 0.1628 0.0435 0.3500 0.32 1qe3:A
3 2q40:A 343 76 0.1705 0.0641 0.2895 1.4 1xfi:A
4 2y53:A 529 61 0.1628 0.0397 0.3443 2.7 2vro:A, 2vro:B, 2y53:B, 2y5d:A, 2y5d:B
5 5vyz:A 1144 89 0.1860 0.0210 0.2697 2.9 5vyw:D, 5vyz:B, 5vyz:D, 5vz0:A, 5vz0:B, 5vz0:D, 7zyy:A, 7zyy:C, 7zyy:B, 7zyy:D, 7zyz:A, 7zz0:A, 7zz1:A, 7zz2:A, 7zz3:A, 7zz3:C, 7zz3:B, 7zz3:D, 7zz4:A, 7zz5:A, 7zz6:D, 7zz6:A, 7zz8:A, 7zz8:C, 7zz8:D, 7zz8:B
6 5vyz:C 1083 89 0.1860 0.0222 0.2697 2.9 5vyw:A, 5vyw:B, 5vyw:C, 5vz0:C
7 2erx:A 168 56 0.1318 0.1012 0.3036 3.2 2erx:B, 6naz:A
8 5e3i:B 398 47 0.1318 0.0427 0.3617 3.6 5e3i:A
9 2gf0:B 174 56 0.1318 0.0977 0.3036 3.7 2gf0:A, 2gf0:C, 2gf0:D
10 1gn9:A 543 24 0.1008 0.0239 0.5417 4.1 1gn9:B, 1gnl:A, 1gnl:B, 1oa0:A, 1oa0:B, 1upx:A, 1upx:B
11 2ve9:F 63 25 0.0698 0.1429 0.3600 6.1 2ve9:A, 2ve9:B, 2ve9:C, 2ve9:D, 2ve9:E
12 6ywe:9 206 43 0.1085 0.0680 0.3256 6.4 6yws:9, 6ywv:9, 6ywx:9, 6ywy:9
13 1b9r:A 105 94 0.1860 0.2286 0.2553 7.1
14 3oyo:A 225 45 0.1163 0.0667 0.3333 7.6 3oyo:B
15 7edd:A 1394 25 0.0853 0.0079 0.4400 8.1 5xyr:A
16 7yiv:A 484 78 0.1628 0.0434 0.2692 8.8 7yiv:D, 7yiv:C, 7yiv:B, 7yiv:G, 7yiv:H, 7yiv:F, 7yiv:E, 7yiw:A, 7yiw:D, 7yiw:C, 7yiw:B, 7yiw:G, 7yiw:H, 7yiw:F, 7yiw:E, 7yix:A, 7yix:B
17 2f7f:A 482 53 0.1318 0.0353 0.3208 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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