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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
THSPSFLQHALSSSDTRAEWPLPGGLAARWLAPGCVELNGDARGADSVLLSCGVHGNETAPIEVVDGMLTDIAAGQLALN
CRLLVMFANLDAIRQGVRYGNYDMNRLFNGAHARHPELPESVRAAELETLAAEFFAGARARKLHYDLHTAIRGSVFEKFA
IYPFLHRTHKREQLAWLQRCGIEAVLLHTQPANTFSYFTSQYCEADAFTLELGKARPFGQNDLSRFSGIDGALRGLLSNP
QANVPDLDEDKLPLFRAKYDLVKHSFKLNLADSVENFTLLPDGMLIAATGGEERILFPNPAVKPGLRAGIVVEPARLPS

The query sequence (length=319) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1yw4:A 319 319 1.0000 1.0000 1.0000 0.0 1yw4:B
2 2bco:A 338 309 0.3041 0.2870 0.3139 4.00e-39 2bco:B
3 8fok:1 1046 100 0.0940 0.0287 0.3000 0.19 3flo:B, 3flo:D, 3flo:F, 3flo:H, 4fxd:A, 4fxd:B, 4fyd:A, 4fyd:B
4 4mri:B 303 77 0.0721 0.0759 0.2987 0.63 2i3c:A, 2i3c:B, 4mri:A, 4mxu:A, 4mxu:B, 4nfr:A, 4nfr:B, 2o4h:A, 2o4h:B, 2o53:A, 2o53:B, 2q51:A, 2q51:B, 4tnu:A, 4tnu:B
5 4v6i:Aa 319 55 0.0533 0.0533 0.3091 0.77 7a1g:O, 7b7d:O, 8bn3:SR, 8bqd:O, 8bqx:O, 8cah:O, 8cas:h, 8cbj:g, 8ccs:7, 8cdl:7, 8cdr:7, 8ceh:7, 8cf5:7, 8cg8:7, 8cgn:7, 8civ:7, 8cku:7, 8cmj:7, 5dat:SR, 5dat:sR, 5dc3:SR, 5dc3:sR, 5dge:SR, 5dge:sR, 5dgf:SR, 5dgf:sR, 5dgv:SR, 5dgv:sR, 8eub:Bg, 8evp:Bg, 8evq:Bg, 8evr:Bg, 8evs:Bg, 8evt:Bg, 8ewb:Bg, 8ewc:Bg, 6fai:g, 5fci:SR, 5fci:sR, 5fcj:SR, 5fcj:sR, 6gq1:AV, 6gqb:AV, 6gqv:AV, 6hhq:h, 6hhq:Rb, 5i4l:SR, 5i4l:sR, 6i7o:O, 6i7o:Ob, 3j6x:RA, 3j6y:RA, 3j77:RC, 3j78:RC, 5juo:WA, 5jup:WA, 5jus:WA, 5jut:WA, 5juu:WA, 8k2d:Sg, 8k82:Sg, 5lyb:SR, 5lyb:sR, 5m1j:g2, 5mc6:O, 5mei:sR, 5mei:h, 7mpi:Bg, 7mpj:Bg, 7n8b:Bg, 5ndg:SR, 5ndg:sR, 5ndv:SR, 5ndv:sR, 5ndw:SR, 5ndw:sR, 7nrc:SO, 7nrd:SO, 5obm:SR, 5obm:sR, 5on6:sR, 5on6:h, 7osa:RACK, 7osm:RACK, 6q8y:O, 6rbe:g, 7rr5:Sg, 6s47:Bh, 6snt:g, 6sv4:O, 6sv4:Ob, 6sv4:Oc, 6t4q:Sg, 6t7i:Sg, 6t7t:Sg, 6t83:gb, 6t83:7, 5tbw:h, 5tbw:Rb, 6tb3:O, 5tga:SR, 5tga:sR, 5tgm:SR, 5tgm:sR, 6tnu:O, 4u3m:SR, 4u3m:sR, 4u3n:SR, 4u3n:sR, 4u3u:SR, 4u3u:sR, 4u4n:SR, 4u4n:sR, 4u4o:SR, 4u4o:sR, 4u4q:SR, 4u4q:sR, 4u4r:SR, 4u4r:sR, 4u4u:SR, 4u4u:sR, 4u4y:SR, 4u4y:sR, 4u4z:SR, 4u4z:sR, 4u50:SR, 4u50:sR, 4u51:SR, 4u51:sR, 4u52:SR, 4u52:sR, 4u53:SR, 4u53:sR, 4u55:SR, 4u55:sR, 4u56:SR, 4u56:sR, 4u6f:SR, 4u6f:sR, 4uer:R, 4v7h:AR, 4v7r:AT, 4v7r:CT, 4v88:Ag, 4v88:Cg, 4v8y:A6, 4v8z:A6, 6wdr:g, 6woo:gg, 6xiq:AV, 6z6j:Sg, 6z6k:Sg, 6zce:h, 7zpq:Ag, 7zrs:Ag, 6zu9:h, 7zuw:Ag, 7zux:Dg, 6zvi:R, 7zw0:sO
6 7aud:A 522 69 0.0596 0.0364 0.2754 0.84 7aud:E, 7aud:B, 7aud:C, 7aud:D, 7aud:F
7 7auc:A 493 69 0.0596 0.0385 0.2754 0.85
8 5je1:A 244 42 0.0533 0.0697 0.4048 0.88 5jdy:A, 5jdy:B, 5jdz:A, 5jdz:B, 5je0:A, 5je0:B, 5je1:B, 5je2:A, 5je2:B, 5je3:A, 5je3:B, 5je4:A, 5je4:B, 5je5:A
9 4cgz:A 629 69 0.0596 0.0302 0.2754 0.97 4cdg:A, 4cdg:B, 4o3m:A
10 5ljw:A 331 63 0.0596 0.0574 0.3016 7.2 5jyg:A, 5jyg:B, 5jyg:C, 5jyg:D, 5jyg:E, 5jyg:F, 5jyg:G, 5jyg:H, 5jyg:I, 5jyg:J, 5jyg:K, 5jyg:L, 5jyg:M, 5jyg:N, 5ljv:A, 5ljv:B, 5ljv:C, 5ljv:D, 5ljv:E, 5ljv:F, 5ljw:B
11 3m3m:A 201 80 0.0721 0.1144 0.2875 7.9
12 5f06:A 213 90 0.0784 0.1174 0.2778 9.9 5f06:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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