Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
THLQGDGLVVLCYHRVLPSSRYAISRREFAQQLDYLRQVGVRFVTPQEAEDYLAGRIHLPGKLVLVTFDDGDLSVYRHAF
PVLKKRKIPFLFFVIAGQVGRKWEGFSMCSWEQIKEMVASGLCVVGLHTYDLHYWDSQAKKPVFLLPGRERLFAEDTARG
TACLKEHLGLKTRYFAYPYGFGTPTTDEILRTQGFSLVFTLRAKVNRPGDAPFVGRVLVTPDSWPQVAAWAQA

The query sequence (length=233) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4wcj:A 233 233 1.0000 1.0000 1.0000 3.82e-175
2 4u10:A 264 251 0.2661 0.2348 0.2470 7.54e-18 4u10:B
3 4f9j:A 599 257 0.2790 0.1085 0.2529 1.33e-15 4f9d:A, 4f9d:B, 4f9j:B, 4p7n:A, 4p7q:A, 4p7r:A, 3vus:A, 3vus:B
4 6dq3:A 227 226 0.2189 0.2247 0.2257 7.92e-08 6dq3:B
5 4hd5:A 316 111 0.1545 0.1139 0.3243 0.009 4v33:A, 4v33:B
6 2iw0:A 226 72 0.1073 0.1106 0.3472 0.033
7 2w3z:A 238 141 0.1674 0.1639 0.2766 0.053
8 5jp6:A 339 144 0.1545 0.1062 0.2500 0.36
9 7ax7:A 205 118 0.0987 0.1122 0.1949 0.56
10 5kzd:A 284 51 0.0773 0.0634 0.3529 0.81 5kzd:B, 5kzd:C, 5kzd:D
11 2c71:A 205 125 0.1373 0.1561 0.2560 0.95 2c79:A
12 4v6v:A1 639 89 0.1030 0.0376 0.2697 1.3
13 1v9x:A 114 61 0.0858 0.1754 0.3279 2.7
14 3j9y:w 639 66 0.0730 0.0266 0.2576 4.2 5kcs:1w
15 4ggj:A 165 65 0.0773 0.1091 0.2769 4.7 4ggk:A
16 7bly:A 216 70 0.0944 0.1019 0.3143 5.0
17 4nyu:A 406 72 0.0815 0.0468 0.2639 5.4 4ny2:A, 4ny2:B, 4nyy:A, 4nyy:B, 4nyy:C, 4nyy:D, 4nz1:A, 4nz1:B, 4nz3:A, 4nz3:B, 4nz4:A, 4nz4:B, 4oui:A, 4oui:B
18 8jej:A 540 36 0.0601 0.0259 0.3889 7.5 8jek:A, 8k6j:A, 8k6k:A, 7w2j:A, 7w2j:D, 7wsq:A, 7wsq:D, 8xcm:A, 8xcn:A
19 4wsq:A 317 37 0.0601 0.0442 0.3784 8.7 8gmc:A, 8gmc:B, 8gmd:A, 8gmd:B, 5l4q:A, 5l4q:B, 7lvh:A, 7lvh:B, 7lvi:A, 7lvi:B, 7rj6:A, 7rj6:B, 7rj7:A, 7rj7:B, 7rj8:A, 7rj8:B, 5te0:A, 4wsq:B
20 4uur:A 124 19 0.0429 0.0806 0.5263 9.4 4uur:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218