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BioLiP
>protein
THEPLEVLKEETVNRHRAIVSVMEELAAVDWYDQRVDASTDPELTAILAHNRDEEKEHAAMTLEWLRRNDAKWAEHLRTY
LFTEGPITA

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5da5:A 91 89 0.9888 0.9670 0.9888 2.04e-60 5da5:J, 5da5:B, 5da5:C, 5da5:D, 5da5:E, 5da5:F, 5da5:H, 5da5:G, 5da5:I, 5da5:K, 5da5:T, 5da5:L, 5da5:M, 5da5:N, 5da5:O, 5da5:P, 5da5:R, 5da5:Q, 5da5:S, 5da5:U, 5da5:d, 5da5:V, 5da5:W, 5da5:X, 5da5:Y, 5da5:Z, 5da5:b, 5da5:a, 5da5:c, 5l89:L, 5l89:M, 5l89:P, 5l89:R, 5l89:U, 5l89:V, 5l8b:A, 5l8b:J, 5l8b:B, 5l8b:C, 5l8b:D, 5l8b:E, 5l8b:H, 5l8b:I, 5l8b:K, 5l8b:T, 5l8b:L, 5l8b:M, 5l8b:O, 5l8b:N, 5l8b:P, 5l8b:R, 5l8b:Q, 5l8b:S, 5l8b:U, 5l8b:d, 5l8b:V, 5l8b:W, 5l8b:X, 5l8b:Y, 5l8b:b, 5l8b:c, 5l8f:B, 5l8f:C, 5l8f:D, 5l8f:F, 5l8f:H, 5l8f:I, 5l8f:G, 5l8g:A, 5l8g:J, 5l8g:B, 5l8g:C, 5l8g:E, 5l8g:D, 5l8g:I, 5l8g:G, 5l8g:F, 5l8g:H, 5l8g:K, 5l8g:L, 5l8g:M, 5l8g:N, 5l8g:O, 5l8g:P, 5l8g:R, 5l8g:S, 5l8g:Q, 5l8g:T, 5l8g:U, 5l8g:d, 5l8g:V, 5l8g:W, 5l8g:X, 5l8g:Y, 5l8g:b, 5l8g:Z, 5l8g:a, 5l8g:c, 6suw:A, 6suw:B, 6suw:C, 6suw:D, 6suw:E, 6suw:F, 6suw:G, 6suw:I, 6suw:H, 6suw:J, 6suw:K, 6suw:L, 6suw:M, 6suw:N, 6suw:O, 6suw:P, 6suw:Q, 6suw:R, 6suw:S, 6suw:T, 6suw:U, 6suw:V, 6suw:W, 6suw:X, 6suw:Y, 6suw:Z, 6suw:a, 6suw:b, 6suw:c, 6suw:d, 6sv1:A, 6sv1:B, 6sv1:C, 6sv1:D, 6sv1:E, 6sv1:F, 6sv1:G, 6sv1:H, 6sv1:I, 6sv1:J, 6sv1:K, 6sv1:L, 6sv1:M, 6sv1:N, 6sv1:O, 6sv1:P, 6sv1:Q, 6sv1:R, 6sv1:S, 6sv1:T, 6sv1:U, 6sv1:V, 6sv1:W, 6sv1:X, 6sv1:Y, 6sv1:Z, 6sv1:a, 6sv1:b, 6sv1:c, 6sv1:d
2 7s8t:J 83 59 0.2472 0.2651 0.3729 8.23e-06 7s8t:A, 7s8t:E, 7s8t:F, 7s8t:H, 7s8t:G, 7s8t:I
3 7s5k:I 68 53 0.2022 0.2647 0.3396 8.97e-04 7s5c:A, 7s5c:B, 7s5c:E, 7s5c:F, 7s5c:G, 7s5c:H, 7s5c:I, 7s5c:J, 7s5c:C, 7s5c:D, 7s5k:A, 7s5k:B, 7s5k:F, 7s5k:E, 7s5k:G, 7s5k:H, 7s5k:J, 7s5k:C, 7s5k:D
4 4emj:A 406 28 0.1461 0.0320 0.4643 0.48 3ef6:A, 4emi:A
5 3f7g:B 101 75 0.2360 0.2079 0.2800 0.59 3f7g:A, 3f7g:C, 3f7g:D, 3f7g:E, 1oxn:E, 1oxn:A, 1oxn:B, 1oxn:C, 1oxn:D, 1oxq:E, 1oxq:A, 1oxq:B, 1oxq:C, 1oxq:D, 1oy7:E, 1oy7:A, 1oy7:B, 1oy7:C, 1oy7:D
6 6s1y:A 595 47 0.1798 0.0269 0.3404 0.81 6s1z:A
7 5nx5:A 287 71 0.2022 0.0627 0.2535 0.84
8 2i3h:B 95 62 0.2022 0.1895 0.2903 1.3 3f7h:A, 3f7h:B, 3f7i:A, 3f7i:B, 3gt9:A, 3gt9:B, 3gta:A, 3gta:B, 2i3h:A, 2i3i:A, 2i3i:B, 1tw6:A, 1tw6:B, 3uw5:A, 3uw5:B
9 5n5e:e 98 59 0.1798 0.1633 0.2712 2.8 5n5e:K, 5n5e:A, 5n5e:Z, 5n5e:B, 5n5e:Y, 5n5e:C, 5n5e:H, 5n5e:D, 5n5e:J, 5n5e:E, 5n5e:W, 5n5e:F, 5n5e:N, 5n5e:G, 5n5e:I, 5n5e:L, 5n5e:V, 5n5e:M, 5n5e:O, 5n5e:P, 5n5e:R, 5n5e:Q, 5n5e:d, 5n5e:T, 5n5e:U, 5n5e:X, 5n5e:b, 5n5e:a, 5n5e:c
10 2wnb:A 273 28 0.1348 0.0440 0.4286 3.0 2wnf:A
11 2e33:A 175 53 0.2022 0.1029 0.3396 4.1
12 3m6a:A 496 61 0.2360 0.0423 0.3443 5.1 3m6a:B, 3m6a:C, 3m6a:D, 3m6a:E, 3m6a:F
13 6wev:AbA 817 32 0.1124 0.0122 0.3125 6.5 8ghr:A, 8ghr:B, 6wet:AaA, 6wet:BaB, 6weu:AbA, 6weu:BbB, 6wev:BbB, 6wew:AbA, 6wew:BaB, 6wfj:AcA, 6wfj:BcB
14 2oh3:A 149 44 0.1348 0.0805 0.2727 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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