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BioLiP
>protein
TGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFG

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7q66:A 37 37 1.0000 1.0000 1.0000 1.13e-18 7q66:C, 7q66:E, 7q66:G, 7q66:I, 7q66:K, 7q66:M, 7q66:O, 7q66:Q, 7q66:S, 7q66:U
2 7al4:D 524 19 0.2432 0.0172 0.4737 6.2 7al4:C, 7al4:B, 7al4:A
3 8iox:A 524 14 0.2162 0.0153 0.5714 7.9 8iox:C, 8iox:D, 8iox:E, 8iox:F, 8iox:G, 8iox:H, 8iox:I, 8iox:J, 8iox:K, 8ip1:A, 8ip1:B
4 1pmx:A 70 31 0.2973 0.1571 0.3548 9.8 1gzr:B, 1gzy:B, 1gzz:B, 1h02:B, 1imx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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