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BioLiP
>protein
TGPTADPEKRKLIQQQLVLLLHAHKCQRREQANGEVRACSLPHCRTMKNVLNHMTHCQAGKACQVAHCASSRQIISHWKN
CTRHDCPVCLPLKNASD

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5hou:A 171 97 1.0000 0.5673 1.0000 1.52e-68 2ka4:A, 1l3e:B, 1l8c:A, 7lvs:B, 2lww:A, 1p4q:B, 7qgs:A, 1r8u:B, 1u2n:A
2 6fgs:A 130 91 0.3299 0.2462 0.3516 0.002
3 6fgn:A 124 91 0.3196 0.2500 0.3407 0.002
4 7xez:A 163 91 0.3299 0.1963 0.3516 0.002 8e1d:A, 1f81:A, 2mzd:A, 7xfg:A
5 3t92:A 113 91 0.3196 0.2743 0.3407 0.002
6 3io2:A 109 85 0.2887 0.2569 0.3294 0.004 3p57:P
7 5hpd:A 158 93 0.3402 0.2089 0.3548 0.010 2ka6:A, 2kje:A
8 5hp0:A 122 93 0.3402 0.2705 0.3548 0.010
9 2k9h:A 57 38 0.1134 0.1930 0.2895 0.46
10 3vb9:B 462 45 0.1856 0.0390 0.4000 0.81 3vb9:D
11 4qu6:A 99 37 0.1237 0.1212 0.3243 5.7
12 3wgc:B 333 24 0.1031 0.0300 0.4167 7.2 3wgb:A, 3wgb:B, 3wgb:C, 3wgb:D, 3wgc:A, 3wgc:C, 3wgc:D
13 6je8:A 469 54 0.1443 0.0299 0.2593 8.4 6jea:A, 6jeb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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