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BioLiP
>protein
TGIVKWFNADKGFGFITPDDGGADVFAHFSAIQMSGYRA

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7oii:B 39 39 1.0000 1.0000 1.0000 2.49e-23
2 7ot5:B 66 39 0.8205 0.4848 0.8205 5.99e-19
3 1c9o:A 66 38 0.5641 0.3333 0.5789 4.65e-10 1c9o:B, 2hax:A, 2hax:B
4 2es2:A 67 37 0.5897 0.3433 0.6216 1.04e-09 3pf4:B, 3pf5:B, 3pf5:A
5 7f3i:A 93 37 0.4615 0.1935 0.4865 2.89e-07 7f3i:C, 7f3i:E, 7f3j:A, 7f3j:C, 7f3j:E, 7f3j:G, 7f3k:A, 7f3l:A
6 6a6j:A 90 37 0.4615 0.2000 0.4865 3.36e-07 6a6j:C, 6a6l:A, 6ktc:A, 6kug:A, 6lmr:A, 5yts:A, 5ytt:A, 5ytv:A, 5ytx:A
7 4a75:A 89 46 0.4872 0.2135 0.4130 4.59e-06 4a75:C, 4a75:E, 4a75:G, 4a76:A, 4a76:G, 4a76:C, 4a76:E, 4alp:A, 4alp:D
8 5udz:A 139 45 0.4872 0.1367 0.4222 5.11e-06 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
9 8ci5:A 1258 26 0.2564 0.0079 0.3846 3.5
10 5o2w:A 248 36 0.3077 0.0484 0.3333 3.6 5o2x:A
11 8brn:B 428 25 0.2821 0.0257 0.4400 5.4 8brn:A, 8brn:C, 8brn:D, 4dhl:A, 4dhl:B, 4dhl:D, 4dhl:C, 4dsy:A, 4dsy:B, 4dsy:C, 4dsy:D, 4dt2:A, 4dt2:B, 4dt2:C, 4dt2:D, 6g46:A, 6g46:B, 6g46:D, 6g46:C, 6hwr:C, 6hwr:B, 6hwr:A, 6hwr:D, 1kbp:A, 1kbp:B, 1kbp:C, 1kbp:D, 3kbp:A, 3kbp:B, 3kbp:C, 3kbp:D, 4kbp:A, 4kbp:B, 4kbp:C, 4kbp:D, 6of5:A, 6of5:B, 6of5:D, 6of5:C, 6ofd:A, 6ofd:B, 6ofd:D, 6ofd:C, 6py9:A, 6py9:B, 6py9:D, 6py9:C, 2qfp:A, 2qfp:B, 2qfp:C, 2qfp:D, 2qfr:A, 2qfr:B, 6vj7:A, 6vj7:B, 6vj7:C, 6vj7:D
12 1m1j:C 390 15 0.1795 0.0179 0.4667 5.8 1m1j:F
13 6snh:X 479 16 0.2051 0.0167 0.5000 6.3 6sni:X
14 8cdu:C 708 26 0.2308 0.0127 0.3462 6.3 8cec:C, 8ced:C, 8cee:C
15 6dcf:D 1176 25 0.3077 0.0102 0.4800 7.6 6vvv:D
16 6cce:D 1195 25 0.3077 0.0100 0.4800 7.6
17 6vvt:D 1200 25 0.3077 0.0100 0.4800 7.6
18 6z11:D 1254 25 0.3077 0.0096 0.4800 7.6 6ccv:D, 6eyd:D, 6f6w:D, 5tw1:D, 5vi5:D, 5vi8:D, 6vvs:D
19 7c5x:A 506 23 0.2308 0.0178 0.3913 8.5 7c5x:B
20 7c5x:A 506 20 0.2051 0.0158 0.4000 9.5 7c5x:B
21 1lqt:B 454 20 0.2308 0.0198 0.4500 9.0 2c7g:A, 1lqt:A, 1lqu:A, 1lqu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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