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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TGEMGILWEFDPIINKWIRLSMKLKVERKPFAEGALREAYHTVSLGVGTDENYPLGTKLFPPIEMISPISKNNEAMTQLK
NGTKFVLKLYKKQASRELYFEDVKMQMVCRDWGNKFNQKKPPKKIEFLMSWVVELIDRSPSNGQPILCSIEPLLVGEFKK
NNSNYGAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGVDDLYTAPQIHTPDGKGFGLGNLGKAGINKFITTHKCNAVCAL
LDLDVK

The query sequence (length=246) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4zme:A 262 250 0.9959 0.9351 0.9800 0.0 5dyj:A, 5dyj:B, 5e4h:A, 5e4h:B, 5e4h:C, 5e4h:D, 5e4h:E, 5e4h:F, 5e4h:G, 5e4h:H, 5e9e:A, 5e9e:B, 3lkm:A, 3lla:A, 3lla:B, 3lmh:A, 3lmh:B, 3lmi:A, 3lmi:B, 3lmi:C, 3lmi:D, 3pdt:A, 4zme:B, 4zmf:A, 4zmf:B, 4zs4:A, 4zs4:B
2 8gm4:A 462 235 0.3659 0.1948 0.3830 3.20e-49
3 8fny:A 497 236 0.3618 0.1791 0.3771 3.76e-48 8fny:C, 8fo6:A, 8gm5:A, 7shq:A
4 1ia9:B 280 186 0.2236 0.1964 0.2957 1.94e-16 1ia9:A, 1iah:A, 1iah:B, 1iaj:B
5 4kuj:B 268 254 0.2602 0.2388 0.2520 5.25e-16 4kuj:A, 4nl0:A, 4nl0:B
6 1iaj:A 253 175 0.1911 0.1858 0.2686 7.94e-11
7 3gon:A 329 26 0.0447 0.0334 0.4231 1.4
8 6h6c:A 151 90 0.0976 0.1589 0.2667 2.2 5eet:A, 5eoh:A, 5eqm:A, 5eu2:A, 5ev5:A, 5eyj:A, 5eys:A, 6eye:A, 5f0b:A, 5f2a:A, 3gk9:A, 3gkt:A, 3gln:A, 8grz:A, 6h5z:A, 6h6i:A, 6h6j:A, 6i3t:A, 6i40:A, 5mjc:A, 5mjd:A, 4mpm:A, 4mpm:B, 4mu5:A, 5nvi:A, 5nw6:A, 4nzi:A, 4o1t:A, 5o17:A, 5o18:A, 5o1k:A, 4o2g:A, 5o27:A, 4o35:A, 4o4t:A, 4o4z:A, 7ohd:A, 1oj6:A, 1oj6:B, 1oj6:C, 1oj6:D, 1q1f:A, 6r1q:A, 6ra6:A, 7vqg:A, 2vry:A, 1w92:A
9 7d6v:C 264 48 0.0650 0.0606 0.3333 2.7 7d6x:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218