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BioLiP
>protein
TFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNV
VRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARI

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3fhm:A 136 126 1.0000 0.9265 1.0000 1.90e-87 3fhm:D, 3fhm:B, 3fhm:C
2 2rc3:C 128 124 0.3730 0.3672 0.3790 8.81e-20 2rc3:A, 2rc3:D, 2rc3:B
3 4fry:B 138 116 0.3571 0.3261 0.3879 1.81e-18 4fry:A
4 4o9k:A 130 125 0.2937 0.2846 0.2960 4.12e-12 4o9k:B
5 3kpc:A 124 122 0.2857 0.2903 0.2951 3.11e-10 3kpb:A, 3kpb:C, 3kpb:D, 3kpd:A, 3kpd:B, 3kpd:C, 3kpd:D
6 3kpc:A 124 50 0.1190 0.1210 0.3000 0.16 3kpb:A, 3kpb:C, 3kpb:D, 3kpd:A, 3kpd:B, 3kpd:C, 3kpd:D
7 3lfz:A 280 111 0.2143 0.0964 0.2432 1.22e-06 3kh5:A
8 3lfz:A 280 138 0.2698 0.1214 0.2464 9.52e-05 3kh5:A
9 3lfz:A 280 123 0.2540 0.1143 0.2602 8.65e-04 3kh5:A
10 3lfz:A 280 50 0.1349 0.0607 0.3400 0.24 3kh5:A
11 7pmz:B 430 112 0.2698 0.0791 0.3036 1.43e-05 7pmz:A, 7pmz:C, 7pmz:D, 7pmz:E, 7pmz:F, 7pmz:G, 7pmz:H, 7pmz:I, 7pmz:J, 7pmz:K, 7pmz:L, 7pmz:M, 7pmz:N, 7pmz:O, 7pmz:P
12 7pmz:B 430 57 0.1667 0.0488 0.3684 0.22 7pmz:A, 7pmz:C, 7pmz:D, 7pmz:E, 7pmz:F, 7pmz:G, 7pmz:H, 7pmz:I, 7pmz:J, 7pmz:K, 7pmz:L, 7pmz:M, 7pmz:N, 7pmz:O, 7pmz:P
13 3fwr:B 146 83 0.1905 0.1644 0.2892 9.05e-05 3fwr:A, 3fws:A, 3fws:B
14 2v8q:E 304 108 0.2143 0.0888 0.2500 1.24e-04 6b1u:E, 6b1u:F, 6b2e:C, 8bik:C, 8bik:F, 6c9f:C, 6c9g:C, 6c9h:C, 6c9j:C, 4cfe:E, 4cfe:F, 4cff:E, 4cff:F, 4cfh:E, 6e4t:C, 6e4u:C, 6e4w:C, 4eag:C, 4eai:C, 4eaj:C, 4eak:C, 4eal:C, 5ezv:E, 5ezv:F, 5iso:E, 5iso:F, 7jhg:G, 7jhh:G, 7jij:G, 5kq5:C, 7m74:G, 7myj:E, 7myj:F, 4qfg:C, 4qfr:C, 4rer:G, 4rew:G, 5t5t:C, 5ufu:C, 2uv4:A, 2uv5:A, 2uv6:A, 2uv7:A, 2v92:E, 2v9j:E, 2y8l:E, 2y8q:E, 2ya3:E, 4zhx:E, 4zhx:F
15 5g5x:A 119 119 0.2381 0.2521 0.2521 1.72e-04
16 8qqp:A 464 113 0.2381 0.0647 0.2655 3.29e-04 8q65:A, 8q65:E, 8qqp:B, 8qqp:C, 8qqp:D, 8qqp:E, 8qqp:F, 8qqp:G, 8qqp:H, 8qqq:A, 8qqq:B, 8qqq:C, 8qqq:D, 8qqq:E, 8qqq:F, 8qqq:G, 8qqq:H, 8qqr:A, 8qqr:B, 8qqr:C, 8qqr:D, 8qqr:E, 8qqr:F, 8qqr:G, 8qqr:H, 8qqt:A, 8qqt:B, 8qqt:C, 8qqt:D, 8qqt:E, 8qqt:F, 8qqt:G, 8qqt:H
17 4gqy:A 147 125 0.2302 0.1973 0.2320 4.20e-04 4gqy:B, 4gqy:C, 4gqy:D
18 4gqy:A 147 52 0.1429 0.1224 0.3462 4.9 4gqy:B, 4gqy:C, 4gqy:D
19 2yvx:A 442 92 0.2063 0.0588 0.2826 5.27e-04 8h5e:A, 4u9n:B, 4wib:B, 5x9g:A, 5x9g:B, 5x9g:C, 5x9g:D, 5x9h:A, 5x9h:B, 2yvx:B, 2yvx:C, 2yvx:D, 2yvy:A, 2zy9:A, 2zy9:B
20 2yvx:A 442 39 0.1270 0.0362 0.4103 8.7 8h5e:A, 4u9n:B, 4wib:B, 5x9g:A, 5x9g:B, 5x9g:C, 5x9g:D, 5x9h:A, 5x9h:B, 2yvx:B, 2yvx:C, 2yvx:D, 2yvy:A, 2zy9:A, 2zy9:B
21 5npl:A 181 112 0.2381 0.1657 0.2679 0.001
22 3tdh:C 316 97 0.1746 0.0696 0.2268 0.002 3t4n:C, 3te5:C
23 3tdh:C 316 121 0.2143 0.0854 0.2231 0.006 3t4n:C, 3te5:C
24 3k2v:A 130 114 0.2063 0.2000 0.2281 0.003 3k2v:B
25 3ddj:A 279 48 0.1270 0.0573 0.3333 0.004
26 2oox:E 333 121 0.2143 0.0811 0.2231 0.005 2oox:G, 2ooy:G, 2ooy:E, 2qr1:G, 2qr1:E, 2qrc:G, 2qrc:E, 2qrd:G, 2qrd:E, 2qre:G, 2qre:E
27 6jig:A 480 80 0.2143 0.0563 0.3375 0.010 6lk4:A
28 3pc3:A 504 83 0.1508 0.0377 0.2289 0.018 3pc2:A, 3pc4:A
29 2rif:A 131 123 0.2778 0.2672 0.2846 0.024 2rif:B, 2rif:C, 2rif:D
30 1zfj:A 476 115 0.2222 0.0588 0.2435 0.078
31 7pji:A 445 116 0.2460 0.0697 0.2672 0.23 4dqw:A, 4dqw:B, 6gk9:A, 6gk9:D, 7pji:B
32 7qem:B 428 115 0.2460 0.0724 0.2696 0.31 7qdx:A, 7qdx:B, 7qem:A, 7qem:D
33 7f75:D 1142 75 0.1825 0.0201 0.3067 1.1 7ckq:D
34 5crg:A 354 30 0.1190 0.0424 0.5000 1.7 5crd:A, 5cre:A, 5crg:B, 5crg:C, 5crg:D, 5crh:A, 5crh:B, 5kn0:A, 5kn0:B, 5kn0:C, 5kn0:D, 5kn1:A, 5kn1:B, 5kn1:C, 5kn2:A, 5kn2:B, 5kn2:C, 5kn3:A, 3trp:A, 3trq:A, 3uom:A, 3uom:B, 3uom:C, 3uom:D, 3uom:E, 3uom:F, 3us3:A, 3v1w:A
35 3tsb:A 490 49 0.1111 0.0286 0.2857 2.2 3tsd:A, 3usb:A
36 3tsb:A 490 115 0.2381 0.0612 0.2609 3.9 3tsd:A, 3usb:A
37 3tsd:B 426 49 0.1111 0.0329 0.2857 2.4
38 2yzq:A 224 88 0.1825 0.1027 0.2614 5.8
39 4ct9:A 394 94 0.2063 0.0660 0.2766 5.8 4cta:A, 4cta:B, 4uoc:A, 4uoc:B, 4uuw:A, 4uux:A, 4uux:B
40 8x6f:D 1176 95 0.1746 0.0187 0.2316 6.2 8x6g:D
41 7oj1:A 401 76 0.1587 0.0499 0.2632 6.5
42 3lpp:B 869 32 0.1111 0.0161 0.4375 6.5 3lpp:D
43 1ty4:B 166 55 0.1429 0.1084 0.3273 7.1 1ty4:A
44 1qzw:A 432 52 0.1429 0.0417 0.3462 7.2 3kl4:A, 5l3s:A, 5l3s:C, 5l3s:E, 5l3s:G, 5l3v:A, 5l3v:B, 1qzw:C, 1qzw:E, 1qzw:G, 3zn8:M
45 6py3:B 238 40 0.1111 0.0588 0.3500 9.7 6pxy:A, 6py3:A, 6py4:A, 6py5:A, 6pyi:A, 6q0f:A, 6q0g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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