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BioLiP
>protein
TFTKACSVDEVPPGEALQVSHDAQKVAIFNVDGEFFATQDQCTHGEWSLSEGGYLDGDVVECSLHMGKFCVRTGKVKSPP
PCEPLKVYPIRIEGRDVLVDFSRAALH

The query sequence (length=107) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2e4p:A 108 107 1.0000 0.9907 1.0000 8.14e-78 2e4p:B, 2e4q:A, 2e4q:C, 2yvj:B
2 1fqt:A 109 105 0.7196 0.7064 0.7333 1.22e-54 1fqt:B
3 3dqy:A 106 106 0.5514 0.5566 0.5566 3.55e-39 4emj:B
4 2qpz:A 103 101 0.3551 0.3689 0.3762 8.87e-23
5 5bok:A 102 101 0.3458 0.3627 0.3663 4.77e-21
6 2i7f:A 102 98 0.3738 0.3922 0.4082 5.37e-19 2i7f:B
7 4nbb:E 114 99 0.3832 0.3596 0.4141 3.65e-18 7buh:A, 7bui:D, 7bui:E, 2de5:D, 2de5:E, 2de5:F, 2de6:D, 2de6:E, 2de6:F, 2de7:D, 2de7:E, 2de7:F, 6llf:D, 6llf:E, 6llf:F, 6llh:D, 6llh:E, 6llh:F, 4nb8:D, 4nb8:E, 4nb8:F, 4nb9:D, 4nb9:E, 4nb9:F, 4nba:D, 4nba:E, 4nba:F, 4nbb:D, 4nbb:F, 4nbc:D, 4nbc:E, 4nbc:F, 4nbd:D, 4nbd:E, 4nbe:D, 4nbe:E, 4nbf:D, 4nbf:E, 4nbf:F, 4nbg:D, 4nbg:E, 4nbg:F, 4nbh:D, 4nbh:E, 4nbh:F, 1vck:A, 3vmg:D, 3vmg:E, 3vmg:F, 3vmh:D, 3vmh:E, 3vmh:F, 3vmi:D, 3vmi:E, 3vmi:F
8 3gce:A 104 100 0.2617 0.2692 0.2800 1.55e-10
9 1sjg:A 112 101 0.3364 0.3214 0.3564 2.67e-09 4p1b:H, 4p1b:I, 4p1c:H, 4p1c:I, 2q3w:A, 1vm9:A
10 8hn2:A 110 100 0.2617 0.2545 0.2800 3.88e-05 8hn2:B
11 8jng:A 147 91 0.2243 0.1633 0.2637 0.004
12 5cxm:A 99 72 0.1869 0.2020 0.2778 0.026 5cxm:B, 5cxm:C, 5cxm:D
13 1z01:A 427 52 0.1589 0.0398 0.3269 0.27 1z01:B, 1z01:C, 1z01:D, 1z01:E, 1z01:F, 1z02:A, 1z02:B, 1z02:C, 1z02:D, 1z02:E, 1z02:F, 1z03:A, 1z03:B, 1z03:C, 1z03:D, 1z03:E, 1z03:F
14 4v5k:AY 97 44 0.1495 0.1649 0.3636 1.5 4udm:B
15 3gkq:A 374 93 0.2336 0.0668 0.2688 5.6 3gkq:B, 3gkq:C, 3gkq:D, 3gkq:E, 3gkq:F
16 1ze1:A 308 28 0.1121 0.0390 0.4286 5.9 2ab4:A, 1r3e:A, 1ze1:B, 1ze1:C, 1ze2:A
17 6k52:A 428 35 0.1028 0.0257 0.3143 6.3 6k54:A, 6k54:B, 6k54:C, 6k55:A, 6k55:B, 6k55:C
18 5olp:A 432 22 0.1121 0.0278 0.5455 7.3 5olp:B
19 3gcf:A 367 92 0.2150 0.0627 0.2500 9.6 3gcf:B, 3gcf:C, 3gcf:D, 3gcf:E, 3gcf:F, 3gcf:G, 3gcf:H, 3gcf:I, 3gcf:J, 3gcf:K, 3gcf:L, 3gcf:M, 3gcf:N, 3gcf:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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